Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2858 ATGGCAGATGTAACGTACCTTCTCCACCATCACCACCCTGAACACGACGACGACCCTCACCAAACGCTAACCCTACCACCCTACTGGTCTCCTCACGATTTCGATTTCTACGCCTCCGATCCCGAATTCCCCCAACAACCGCATAACAACCACCACCACCACCACCACCACCATCGCCACCACCACTTTCCCCAATCTGGTTCGTCCTCCATTCTCGACCGAGAGAATCAGGTCAATTTCGTTATGGATTTATTCCAGCAGCGTGTTGAGCAGTCACAGGTCATGGGACACCCTTTAAACGACGCCGTTTTCGGGAGCAGCGATTTTGGGATTGAAATGGACGCTTTTACCCTTGATTTAGGGTTCCCTTCTGACAGGGACTCCCACCACCGCGCCAATGCCGCTGGAGGGGATTCTTCCGCCGGTGGTGTCGTTGTCGTCGACGATGACGATTTCTTCTTCGGGAGGAGGGTTTCGGGGTCCGAATCCGGCGACGCGGCGGCGTTCGAGAACTGCGTGAGCCTCCTAGGGTTCGGATCGGACTCCGACGAGGAAGAAGACAACGGCGTTCTCCGAATCTGCGTGCATTCCGACGAAGAGTACACTTTGCACGACGAAAACGACGACGTTTCGAGTATTCCTCTGTGCTGGGACTCGCTGCAGTTGGAAGATAACAGAGAGAACAACGACGATTTCGAGTGGGAGGAGGTTGATGGAAGGGTCGACGAGAGGGAAGTTCTAAGCATGCTCACCGTCGAAGACGATAGATCCGGCTCGGTGTCCGTTTCGCCGATCACCGGAATCGAAGAAGCCGAAGAAGAAGAGGTTAACGTTTTTAGGGTTGGAGGAATGGAGAATTTGGAATGGGAAGTGCTTCTGAATGCAAACAATTTGGACACAATCACGAGCCCGGATTTGGATCACGATTCCGAACCCTATTTTGGTGATCACGATGATTATATTTACACTGCAGAGTATGAAATGATGTTTGGCCAATTCGCCGATAATGATAATCCATTGAACGGTAGGCCTCCGGCTTCGGCTTCCGTCGTCCGGAGCCTGCCGTCAGTGGTGGTAACAAAGGATGACGTGGAAGGGAACAATGCGCTCTGTGCTGTTTGCAAGGATGAGTTTTGTGTTGGGGAGAGTGTAAAGGTGTTGCCTTGTTCCCATCGTTATCATGGTGACTGCATTCTGCCATGGTTGGGGATTAGGAACACTTGCCCCGTCTGCCGCCATGAGTTCCCCACTGATGATGCTGATTATGAACGTAGGAGGCTGCACAGATCTGGCCAGAGGATTTGA 1305 0.5249 MADVTYLLHHHHPEHDDDPHQTLTLPPYWSPHDFDFYASDPEFPQQPHNNHHHHHHHHRHHHFPQSGSSSILDRENQVNFVMDLFQQRVEQSQVMGHPLNDAVFGSSDFGIEMDAFTLDLGFPSDRDSHHRANAAGGDSSAGGVVVVDDDDFFFGRRVSGSESGDAAAFENCVSLLGFGSDSDEEEDNGVLRICVHSDEEYTLHDENDDVSSIPLCWDSLQLEDNRENNDDFEWEEVDGRVDEREVLSMLTVEDDRSGSVSVSPITGIEEAEEEEVNVFRVGGMENLEWEVLLNANNLDTITSPDLDHDSEPYFGDHDDYIYTAEYEMMFGQFADNDNPLNGRPPASASVVRSLPSVVVTKDDVEGNNALCAVCKDEFCVGESVKVLPCSHRYHGDCILPWLGIRNTCPVCRHEFPTDDADYERRRLHRSGQRI* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2858 434 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 72 427 - -
Ahy1g2858 434 SMART ring_2 371 411 IPR001841 -
Ahy1g2858 434 SUPERFAMILY RING/U-box 354 418 - -
Ahy1g2858 434 ProSiteProfiles Zinc finger RING-type profile. 371 412 IPR001841 -
Ahy1g2858 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 418 IPR013083 -
Ahy1g2858 434 MobiDBLite consensus disorder prediction 39 70 - -
Ahy1g2858 434 MobiDBLite consensus disorder prediction 49 64 - -
Ahy1g2858 434 CDD RING-H2_RNF126_like 371 412 - -
Ahy1g2858 434 PANTHER - 72 427 - -
Ahy1g2858 434 Pfam Ring finger domain 371 412 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2858 Ahy-Chr1 109106427 109107905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2858 8 418 C3H Transcription Factor Family AT5G60820 36.830 1.77e-58 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2858 - - adu:107469048 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2067 11 130814101 130815808 Ahy1g2858 1 109106427 109107905 hybridization