Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2742 ATGGACGAAGCTTCGTTGATGCGCAACACCGATTGCGTTTATTTCTTGGCATCTCCCCTCACTTGCAAGAAGGGAGCTGAATGCGAGTATCGGCATAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGTTATCTGGCAGTTGCCTTAATCCAACATGTGCTTTCAGGCACCCTCCATTGGATGGCCAGACTGGAGTTTCATCTGAGCCAACACAGTCTGCTGTGCCTGCAAATAAGACAATGGTTCCCTGTTATTTTTTCTTCTATGGATATTGCAATAAAGGCGACAGATGCTCATTTTTGCATGGGCATGATGAGAGCCATTTCACTGTAAAGCCTGTAAAGAATGACAAGGGAGGCACTGATCCACCCAACCTAGAGAATAAGGTGTTGTCAGGAACTGCCCCATCAACAACTGAAACTCATTCGAACCCATCGTTAACTGCCCCAAAGGCTTTGCCCACTTTCAAGCCTCCACCTAAGGAAGATCTTCAACTATCCTTACCAAAAAATGTTAAACAGCAAGGTGATTTCCCTACATATGTTAAACAGCAAGGTGATTCCCCTACATATGCTGTTGAGTATGAAGAAGCTACAGTTGCAGGGTTGGAGTCTCCGTATCCAGAAGAAAGATTTGTTGATAACATCTCTCAACGATGCAGTGAGCAGGGTTCAGAGGAGCAAGTAAATGGTCACATCGAGCCTGATGAACGTTGGGAATCATCATCCCCTGGATTTGATGTTCTTGTTCATGATGAATCGGCAAACTTGGGCTATGAGGAGGATCCTGAATATCTTCCTGATGGGGAACATGAGGAACTGAATGAACAATACTTGGGGAAAAGGATTCAGATGAGTGATATAGCTAGCTGTGACGGGAAGTTAGATCTACGAGACCATCTGAGAAGACGAAGGGAAAGTAGTGGTCCACCTGATGCGAGTTTCATCAGACGACATGAATCCTCTTCTTTGATGGTTCGAAACCGGGAAAGGCATCAAAGGCATTACAATGAACAGAGACTAAGGGGAAGATTGTCATCGCAAGTGGGAATTACCACTATAGACCCCATTGGAGAGGTTGAAACTCTTTCAATTGCTAACAAGCCAAGGTTATCTAGGAATTCCCAGCAGCATTGGCCAAGGAAGCATTATAGAGAAAAGCCATCTAAACGCCAGTTTCATTCATCTAATGACTCCAGGAGACCAGTTTTCAAGCAAAGGAGATTTGTTCACGAGTCCTCTACATTTTCAGGACCCAAGAGCCTTGCAGAAATTAGAGAAGAGAAGAAAAAGGCTGCAGGAAGTTTTCACTGCAAAAGCACATCACCTGATTTTCAGGACCCCAAACCTCTTAGTGAAATTCTCAAGGGCAAAAGGAGTGTGGACGGAGTTGGAGATGTCAATGTCTGCAGCAACTGA 1428 0.4482 MDEASLMRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGSCLNPTCAFRHPPLDGQTGVSSEPTQSAVPANKTMVPCYFFFYGYCNKGDRCSFLHGHDESHFTVKPVKNDKGGTDPPNLENKVLSGTAPSTTETHSNPSLTAPKALPTFKPPPKEDLQLSLPKNVKQQGDFPTYVKQQGDSPTYAVEYEEATVAGLESPYPEERFVDNISQRCSEQGSEEQVNGHIEPDERWESSSPGFDVLVHDESANLGYEEDPEYLPDGEHEELNEQYLGKRIQMSDIASCDGKLDLRDHLRRRRESSGPPDASFIRRHESSSLMVRNRERHQRHYNEQRLRGRLSSQVGITTIDPIGEVETLSIANKPRLSRNSQQHWPRKHYREKPSKRQFHSSNDSRRPVFKQRRFVHESSTFSGPKSLAEIREEKKKAAGSFHCKSTSPDFQDPKPLSEILKGKRSVDGVGDVNVCSN* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2742 475 SUPERFAMILY CCCH zinc finger 84 111 IPR036855 GO:0046872
Ahy1g2742 475 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Ahy1g2742 475 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Ahy1g2742 475 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Ahy1g2742 475 Pfam RNA-binding, Nab2-type zinc finger 86 106 - -
Ahy1g2742 475 Gene3D - 2 63 - -
Ahy1g2742 475 Gene3D - 72 132 - -
Ahy1g2742 475 MobiDBLite consensus disorder prediction 371 407 - -
Ahy1g2742 475 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Ahy1g2742 475 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 284 463 - -
Ahy1g2742 475 MobiDBLite consensus disorder prediction 305 325 - -
Ahy1g2742 475 Pfam Zinc-finger containing family 8 64 IPR041686 -
Ahy1g2742 475 MobiDBLite consensus disorder prediction 130 153 - -
Ahy1g2742 475 MobiDBLite consensus disorder prediction 378 392 - -
Ahy1g2742 475 MobiDBLite consensus disorder prediction 115 166 - -
Ahy1g2742 475 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Ahy1g2742 475 MobiDBLite consensus disorder prediction 393 407 - -
Ahy1g2742 475 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 283 - -
Ahy1g2742 475 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 284 463 - -
Ahy1g2742 475 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 283 - -
Ahy1g2742 475 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2742 Ahy-Chr1 106961222 106964172 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy1g2742 zf-CCCH_3 3.90E-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2742 - - adu:107469835 836.254