Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2707 ATGGCTGCAGCAGAGGCAGCTCAAGCTGCCGCTGGTCCACGGTATGCACCTGATGATCCCACCCTTCCTACGCCATGGAAGGGGCTAATTGATGGAAGCACTGGTCTTTTGTACTACTGGAACCCTGAAACTAATGTCACCCAGTATGAGAAACCTCCCCCTTTGCCGTCGGGCCCTGCTCCGGCTGCTTCTACACCCAACATGGCGCCCATACCCGTGGCTCATGCGATGCAATCTGGTGGGATGATGGGGCAGCATGGGCAGCAAATGCTTCAGTCCTCTCAACAGCAAGGGAGTAACCTTGCTCAGCAACATGGGCAAATGATGCCACAACAGCAGAGTTCGCATGTGGCATCTCAGCAGAAGCCATCTCCGGTTGCACAAGGGGTGCAACAGCAGAATTTGCAGTTGGCACAGTCCATGCCACAACCAGGGTTTAATCAGGCTGGACAGCATTCATTGCCGCATCAGGGACAGCATTCAATGCAGCCTCAGGGACAGTATCCCATGCAACCCCAAGGGCAACAAATGGTCCAGCCTAAAGGGCAGCAGATGACACAACAACCACATCAGATGCATTATCAGATGCAGCCCCAAGGTATCAATGCCCAACATTTTGGTCAAGGAGCATCTCAGGCTCAGGGCTCACATTCTGTGCAACCACAAGCACATCAATTCGCCCCCCAGAACATGCATTATATGCCATATCAGCCAAACATGCCTCAACCTGTGCAGCCAAGTTCCCAGCATAACATGCATGGTCATTCTTATGAAAACCAACAAGACTTCAAATCAGCATTCCCAAAGATAGAGGAACCAGAGTTTAAAAATGAAAACCAGGTTGGAGTTTCGCCATCTAACTATCAACAAACCAATCAGAACATTCCTGCTGGAGTTAGATCCGGACCATCTGGGCAAGTGCCAGATGGAGGTGCAAATGCTGGTCACTCAAAACAGTTTGGTGGCGCACCAGGAAGCATACAACAGTCTCCCTCTGCAGTGCCATTACAACAGGGTAGTTCTTATCCAGTTTACCAACATGGTCCTAGCTTTCAAAACCAGATGGGGCCTGGTATGATGCATGGTCATCCACCCAATGTCCATCCTGGAAGCCAGAAGATGGGACATGCAGATAATTTTCATGGTAGAGCTGGGAATGAATATTACTATAACTCTAGCAAAGAGATGCCAGCTATGGGTCCTCAGCAGCCAAATATTGCACCAATACCCATTTCAACAAAGCAGCAGGATATGAGAATGGGCAGCAGCCCTTTTCAAAATGTAATGCCTAGTGGAAATGGAAGTGGTATCCCAGGTCATCCAATGCACATGTTTCCACCAGTAGGAGGGCATCCGCCTCTCTCAAGTAACTCCTTGAAAGGACCTCCTTATATGGGATCTACAGATGTTACTGATATGACACCTGCTGAAATTTATTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTTATGACATTTGATGCTACTGGATTTCCTCCAGAGATTTTGAGAGAGATATATTCTGCTGGCTTCTCAAACCCAACACCAATTCAGGCTCAAACTTGGCCAGTAGCACTGCAAGGTAGGGACATAGTGGCAATTGCAAAAACAGGCTCTGGCAAAACATTGGGCTACTTAATGCCTGCATTCATCCTTCTTAGGCAGAGAAGGAATAATCCTTTGAATGGCCCCACTGTCTTGGTTTTAGCTCCAACACGTGAACTTGCTACACAGATCCAAGATGAGGCTGTCAAATTTGGAAGATCTTCACGTTTCTCTTGCACGTGTTTGTATGGTGGAGCACCCAAAGCCCAACAGCTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGCCGACTCAATGACATCCTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTGCTTGTGCTTGATGAGGCTGACCGTATGCTTGACATGGGTTTTGAACCTCAAATCCGGAAAATTGTTAATGAGATTCCACCACGTAGGCAAACTCTCATGTATACGGCAACATGGCCAAAAGAAGTAAGAAAAATTGCCAGTGACCTGCTCGTTAATCCTGTTCAGGTTAACATTGGAAGTGTTGATGAGCTTGCCGCAAATAAAGCTATCACACAGTATGTTGAATTTGTCCCTCAAATGGAGAAGCAGAGGCGATTAGAGCAGATCCTCAGATCCCAAGAGCGGGGCTCTAAGGTTATTATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCCCGTAGTATTGGTCGCAATTATGGGGCTGCTGCAATTCATGGTGACAAGTCTCAAAGTGAGAGGGATTGGGTTTTAAATCAGTTCCGGAGTGGGAAGTCCCCAGTTTTAGTTGCCACTGATGTTGCTGCTCGTGGGCTTGACATCAAGGATATAAGGGTGGTTATAAACTATGATTTCCCTACTGGAGTTGAGGATTATGTACACCGAATTGGAAGAACTGGACGGGCAGGTGCTACTGGAGTATCGTACACCTTTTTCTCGGAGCAGGACTGGAAACATGCATCTGATTTAATCAAAGTCTTGGAGGGTGCAAACCAGCATGTGCCTCCAGAGCTAAGACAGATGACCTTGCGCGGACCACCAAACTTTGGAAAAGAGCGGGGTGGGATGAGTCGTTTCGACTCTGGTGGTGGTGGGCGTTGGGATAATGGTGGTCGTGGTGGCATGAGGGATGGGGGCTTTGGTGGTCGTGGTGGCATGAGAGATGGTGGCTTTAGTGGTCGGGGCGGCATGAGGGATGGTAACTTTGGTGGCCGAGGTGGCATGAGGGAGAGTGGATTCAGCAATGATGGTGGCATGAGAGATGGTGGCTTTGGTGCTCATGGTGCTAGCGGTCAAGGTGGGAGAGGTGATATGTTTGGTGGTAGGGGAAATAGAGGTCGAGGATTTGGTGGCCCTCGTGGTGGTCATGCTGGGTGGGGTAGAGGGGATCGTGGTCCAAATGACCGATTCAACATGGATGGAAGAGGAAGAGGGCGAGGACGTGGGCGATTAGACAACAGAAGAGATGTTGGATACAGGAGTAGAGGCAGAAGCCGTAGCCGTAGCCCAGAGAGAGTACGAACATGGGACTATAGTAGCAGAAGTCGTAGTAGGAGTCGCAGCAGTAGGAGCTGGAGCCGGAGCCGGAGCCGAAGCCGAAGCAGAAGCCGCAGTTGGTCGCGTGGTCGCAGTCGGAGTCGCAGCTATAGCCCTAGCCCTCGTCGGAGTCGAAGCCGCAGTCGTAGCGGTCGCAGTTACAGCCGCAGCCGCAGCCGAAGTCCCCGTAGAAGTCCCAGCTATGATAGGCGTGATAGGACAGATCAACACCATTCTGATCAAAAGGATTATAGAGAACCAGAGGTCCAAGCTCCCAATCCGGGAGTGTCTCCAAGCTCCCAAGGGCAGCAGAATTCAATTTTGGGAACTGATCAAGTGGATCAGGCGCCACTGGTTGCTGGGAGCGGTGACCCAGAAGATCCCAATGCTCTGGCATAG 3534 0.4969 MAAAEAAQAAAGPRYAPDDPTLPTPWKGLIDGSTGLLYYWNPETNVTQYEKPPPLPSGPAPAASTPNMAPIPVAHAMQSGGMMGQHGQQMLQSSQQQGSNLAQQHGQMMPQQQSSHVASQQKPSPVAQGVQQQNLQLAQSMPQPGFNQAGQHSLPHQGQHSMQPQGQYPMQPQGQQMVQPKGQQMTQQPHQMHYQMQPQGINAQHFGQGASQAQGSHSVQPQAHQFAPQNMHYMPYQPNMPQPVQPSSQHNMHGHSYENQQDFKSAFPKIEEPEFKNENQVGVSPSNYQQTNQNIPAGVRSGPSGQVPDGGANAGHSKQFGGAPGSIQQSPSAVPLQQGSSYPVYQHGPSFQNQMGPGMMHGHPPNVHPGSQKMGHADNFHGRAGNEYYYNSSKEMPAMGPQQPNIAPIPISTKQQDMRMGSSPFQNVMPSGNGSGIPGHPMHMFPPVGGHPPLSSNSLKGPPYMGSTDVTDMTPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQDEAVKFGRSSRFSCTCLYGGAPKAQQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAITQYVEFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRNYGAAAIHGDKSQSERDWVLNQFRSGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKHASDLIKVLEGANQHVPPELRQMTLRGPPNFGKERGGMSRFDSGGGGRWDNGGRGGMRDGGFGGRGGMRDGGFSGRGGMRDGNFGGRGGMRESGFSNDGGMRDGGFGAHGASGQGGRGDMFGGRGNRGRGFGGPRGGHAGWGRGDRGPNDRFNMDGRGRGRGRGRLDNRRDVGYRSRGRSRSRSPERVRTWDYSSRSRSRSRSSRSWSRSRSRSRSRSRSWSRGRSRSRSYSPSPRRSRSRSRSGRSYSRSRSRSPRRSPSYDRRDRTDQHHSDQKDYREPEVQAPNPGVSPSSQGQQNSILGTDQVDQAPLVAGSGDPEDPNALA* 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2707 1177 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Ahy1g2707 1177 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 648 656 IPR000629 -
Ahy1g2707 1177 MobiDBLite consensus disorder prediction 872 1177 - -
Ahy1g2707 1177 SMART ww_5 21 54 IPR001202 GO:0005515
Ahy1g2707 1177 MobiDBLite consensus disorder prediction 1107 1132 - -
Ahy1g2707 1177 Pfam Helicase conserved C-terminal domain 728 836 IPR001650 -
Ahy1g2707 1177 MobiDBLite consensus disorder prediction 1053 1104 - -
Ahy1g2707 1177 MobiDBLite consensus disorder prediction 995 1050 - -
Ahy1g2707 1177 SMART helicmild6 752 836 IPR001650 -
Ahy1g2707 1177 Gene3D - 707 877 IPR027417 -
Ahy1g2707 1177 CDD SF2_C_DEAD 716 845 - -
Ahy1g2707 1177 MobiDBLite consensus disorder prediction 1 25 - -
Ahy1g2707 1177 MobiDBLite consensus disorder prediction 49 68 - -
Ahy1g2707 1177 Pfam WW domain 22 52 IPR001202 GO:0005515
Ahy1g2707 1177 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 731 875 IPR001650 -
Ahy1g2707 1177 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 497 525 IPR014014 GO:0003724
Ahy1g2707 1177 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 289 967 - -
Ahy1g2707 1177 MobiDBLite consensus disorder prediction 294 386 - -
Ahy1g2707 1177 MobiDBLite consensus disorder prediction 78 192 - -
Ahy1g2707 1177 MobiDBLite consensus disorder prediction 1138 1157 - -
Ahy1g2707 1177 MobiDBLite consensus disorder prediction 322 353 - -
Ahy1g2707 1177 MobiDBLite consensus disorder prediction 52 66 - -
Ahy1g2707 1177 SMART ultradead3 516 719 IPR014001 -
Ahy1g2707 1177 Gene3D - 472 706 IPR027417 -
Ahy1g2707 1177 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Ahy1g2707 1177 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 528 702 IPR014001 -
Ahy1g2707 1177 Pfam DEAD/DEAH box helicase 521 691 IPR011545 GO:0003676|GO:0005524
Ahy1g2707 1177 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 289 967 - -
Ahy1g2707 1177 SUPERFAMILY WW domain 14 52 IPR036020 GO:0005515
Ahy1g2707 1177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 852 IPR027417 -
Ahy1g2707 1177 MobiDBLite consensus disorder prediction 82 192 - -
Ahy1g2707 1177 CDD WW 23 51 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2707 Ahy-Chr1 106370435 106376756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2707 485 874 Eukaryotic Initiation Factors Gene Family AT3G19760 34.351 3.81e-67 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2707 K12823 - gmx:100807830 1332.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy1g2707 1 106370435 106376756 Ahy14g0908 14 14651517 14654407 PCT
Ahy1g2707 1 106370435 106376756 Ahy4g0824 4 12910539 12913065 PCT
Ahy14g0908 14 14651517 14654407 Ahy1g2707 1 106370435 106376756 PCT
Ahy4g0824 4 12910539 12913065 Ahy1g2707 1 106370435 106376756 PCT