Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2672 ATGGAGGTAGAGGATGATGACTGGGACTTGACCGCAGAAGAACTCGATTCTCTTGAACGCGACGCTTTCCAGAAAATTGCTCAACTTCGCGACTCTTCTACCCCTCCTTCTTCTCAACAATTCAATCTGCACCAACACCAACAACACCATTTTCCAAAACCACCTTCTGCCAACCATTCCCAACCCTTCCCACCAAACCCCATTTCCGATTCCCGTCCTCAAAGGGTGGACGCTTTGCCTCAAGGAGGTAGAGCATTACCCCCCTCATTGAAACCAGGGACAAAAAAGGATGAACCTTCTAAAGAACTGCCGAAGTTTTCCGTCAAATTTTTTCTTCATTCCAGTGGGCATGTTGCAGCGAAATTCCAATATGACCAGGTAATAATTTCTGCTTTTCGAAGAATCCCTAGAGCTTCTTGGAATGCAAAAGAAAGGTTATGGATGTTCCCACTTTCTTCCTTGTCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGGTGGAGAATTTAGATCCTTTAGTGCACCGTGCCATTGTTTCTGCATCCGCTGTTCCAGATCTTCGAGATCGTTACGACAAGATCCCTAGTTACATTGAATCAAAGCTTTTACCATTTCAGAGAGAAGGTGTAAGGTTTATTTTACAACATGGAGGGCGTGCTCTTTTGGCCGATGAAATGGGACTAGGAAAAACTTTGCAGGCCATTGCTGTAGCTTCATGCATTCAGGAGTCATGGCCTGTTCTCATAATTGCACCATCATCATTGCGCCTGCAATGGGCTTCTATGATTCAACAATGGCTGAATCTTCCTTCTTCAGATATACTTATCGTCTTACCTCAAAGTGGTGGATCAAACAGAGGAGGCTTCAATATAGTATCCCCAAGTGCAAAAAGTAACATTCGTTTGGATGGACTCTTCAACATTATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTCACAACATTGGACTTTAAGGTTGTAATTGCAGATGAATCACACTATCTGAAGAATGCTCAGGCAAAGAGGACTACTGCAACTCTTCCTGTTATAAAGAAAGCTCAATACGCAATATTGCTTAGTGGAACTCCTGCTTTATCTCGACCAATAGAACTGTTCAAGCAGCTGGAAGCCTTGTATCCTGGCGTATATAAGAATGTTCATGAATATGGTAACCGATATTGCAAGGGTGGAGTTTTTGGAGTTTATCAAGGGGCAAGTAATCATGAAGAATTACACAATTTGATGAAGGCAACAGTGATGATACGAAGGCTTAAAAAAGATGTTCTTTCTCAACTTCCTGTAAAGCGTAGGCAACAAGTCTTCTTAGACTTAGCTGACAAGGACATGAAGCAAATTAACGCTTTATTCCGTGAGTTGGAGGTGGTAAAAGCCAAAATTAAGTCTGCCAAATCAAAAGATGAGGCTGAATCTCTCAAGTTTACTCAAAAAAATCTGATTAACAAGATATATACTGATTCTGCAGATGCCAAGATTCCTGCTGTTCTTGAATATCTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACATCATCAGCCAATGATAGATGCGATACATGAGTTCCTTCTTAGGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACACCCGCTGCATCAAGGCAGCAATTGGTTACAGATTTCCAGGAAAAGGATTCTATCAAGGCAGCTGTGTTATCCATTAAAGCTGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTGCAGAACTATCCTGGACTCCAGGTGACCTAATTCAGGCCGAAGATCGCGCTCATCGAATTGGCCAGGTTTCTTCAGTAAATATATACTACTTGCTGGCAAATGATACGGTTGATGACATCATATGGGATGTGGTGCAATCCAAACTGGATAATTTGGGGCAGATGTTAGATGGCCATGAGAATACCTTAGCTGTCTCAAATAATCAACCATTGAGTAGCCCTGCAAAGCATACTACTATTGAGCATAGCCCTTCAAAGCAGAGAACTCTTGACCAGTTTGTCAGAAGATGTGATAACGTGGATAGATCAGAACATCAGCCTGACCCAAAACGGCCGCGTCAGTCATGA 2130 0.4211 MEVEDDDWDLTAEELDSLERDAFQKIAQLRDSSTPPSSQQFNLHQHQQHHFPKPPSANHSQPFPPNPISDSRPQRVDALPQGGRALPPSLKPGTKKDEPSKELPKFSVKFFLHSSGHVAAKFQYDQVIISAFRRIPRASWNAKERLWMFPLSSLSEAEKVLGEISNYKVQVENLDPLVHRAIVSASAVPDLRDRYDKIPSYIESKLLPFQREGVRFILQHGGRALLADEMGLGKTLQAIAVASCIQESWPVLIIAPSSLRLQWASMIQQWLNLPSSDILIVLPQSGGSNRGGFNIVSPSAKSNIRLDGLFNIISYDLVPKLQNMLTTLDFKVVIADESHYLKNAQAKRTTATLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPGVYKNVHEYGNRYCKGGVFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFRELEVVKAKIKSAKSKDEAESLKFTQKNLINKIYTDSADAKIPAVLEYLGTVIEAGCKFLIFAHHQPMIDAIHEFLLRKKVGCIRIDGGTPAASRQQLVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLDNLGQMLDGHENTLAVSNNQPLSSPAKHTTIEHSPSKQRTLDQFVRRCDNVDRSEHQPDPKRPRQS* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2672 709 Gene3D - 468 699 IPR027417 -
Ahy1g2672 709 Pfam Helicase conserved C-terminal domain 506 615 IPR001650 -
Ahy1g2672 709 Pfam SNF2-related domain 224 486 IPR000330 GO:0005524|GO:0140658
Ahy1g2672 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 662 IPR027417 -
Ahy1g2672 709 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 692 - -
Ahy1g2672 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 429 IPR027417 -
Ahy1g2672 709 CDD SF2_C_SNF 501 626 - -
Ahy1g2672 709 Coils Coil 458 478 - -
Ahy1g2672 709 ProSiteProfiles HARP domain profile. 99 176 IPR010003 -
Ahy1g2672 709 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 387 IPR014001 -
Ahy1g2672 709 MobiDBLite consensus disorder prediction 27 55 - -
Ahy1g2672 709 MobiDBLite consensus disorder prediction 662 681 - -
Ahy1g2672 709 Gene3D - 180 454 IPR038718 -
Ahy1g2672 709 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 692 IPR030101 GO:0006281|GO:0031297|GO:0036310
Ahy1g2672 709 SMART helicmild6 532 615 IPR001650 -
Ahy1g2672 709 SMART ultradead3 202 395 IPR014001 -
Ahy1g2672 709 MobiDBLite consensus disorder prediction 27 101 - -
Ahy1g2672 709 CDD DEXHc_HARP_SMARCAL1 206 429 - -
Ahy1g2672 709 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 507 658 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2672 Ahy-Chr1 105785687 105793541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2672 505 655 RAD5 or RAD16-like Gene Family AT1G11100 33.775 4.32e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy1g2672 SNF2_N 1.30E-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2672 K14440 - gmx:100778246 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2163 11 134129036 134136931 Ahy1g2672 1 105785687 105793541 hybridization