Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2607 ATGAGAAATTTGGAGATACAAATGGGCCAACTTGCTCAAAGAATGGAAAAATCCACAAATTTTTTTTCCAGTGATACAATCCCAAACCCACAGGAAGAATGCAAGGCTATTTATTTGAGAAATGGAAAGGTAGTAAGAGAAGAGAAGGAAGAAACCAAGGAGTCCAGTGACAAACAAGGGAAAGAAGCAACAGAGGACATCATTCAGCAAGAGGAGCATGTGACTCCCACCATACTTTTTGTAGATAGAAAGTATGAGGAGGCATTATTCCAGTATGAACTTGCCCTACAAGTTGCACTTAACATGTCTTCATCGGTGGAAGTACGTTTGATCTGCCATGCAAATCGTGCTGCATGCTATCAGAAACTGGGAAAATATGACAGCACAGTTAAAGAATGCACACAAGCATTAGAACTGAACCCTGCATACATTATTAAAGCATTGGCAAGAAGAGGAGAAGCCCATGACAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAGGATCTTAGAAATTGATCCGTCAAATGATCAAGCCAGGAAGGGTATTTGCCGACTTGAGCCGCTTGCTGCAGAAAAGCGGGAAAAGATGAAGGAAGAAATGATGGACAAGTTTTTTGTTGTCTTTATCTTTGTTTTCTAA 648 0.4028 MRNLEIQMGQLAQRMEKSTNFFSSDTIPNPQEECKAIYLRNGKVVREEKEETKESSDKQGKEATEDIIQQEEHVTPTILFVDRKYEEALFQYELALQVALNMSSSVEVRLICHANRAACYQKLGKYDSTVKECTQALELNPAYIIKALARRGEAHDKLEHFEEAIADMKRILEIDPSNDQARKGICRLEPLAAEKREKMKEEMMDKFFVVFIFVF* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2607 215 SUPERFAMILY TPR-like 78 189 IPR011990 GO:0005515
Ahy1g2607 215 ProSiteProfiles TPR repeat profile. 145 178 IPR019734 GO:0005515
Ahy1g2607 215 MobiDBLite consensus disorder prediction 47 68 - -
Ahy1g2607 215 Gene3D Tetratricopeptide repeat domain 53 203 IPR011990 GO:0005515
Ahy1g2607 215 Pfam Tetratricopeptide repeat 146 178 IPR013105 -
Ahy1g2607 215 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 36 207 - -
Ahy1g2607 215 Pfam Tetratricopeptide repeat 112 142 IPR001440 GO:0005515
Ahy1g2607 215 SMART tpr_5 145 178 IPR019734 GO:0005515
Ahy1g2607 215 SMART tpr_5 110 143 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2607 Ahy-Chr1 104920715 104929609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2607 80 201 Calmodulin-binding Proteins AT3G25230 36.154 4.39e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2607 K24926 - aip:107613396 288.885