Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2596 ATGATGGGTGAGTCAGATAACGAGTCAGGAGGTCAAGGAGGGAACGAGTTCTCATCATCATCAGGAGGTAGTGGACTATGCAGAGAACAGGACCGCCTTCTTCCGATTGCCAACGTCGGAAGAATCATGAAGAAGGCACTTCCGGCGAACGCCAAGATCTCAAAGGAGGCCAAAGAGACGGTGCAAGAGTGCGTTTCTGAGTTCATAAGCTTCATAACAGGGGAAGCTTCTGACAAGTGCCAGAAGGAGAAGCGGAAGACCATCAACGGTGATGATCTCTTGTGGGCCATGACTACGCTCGGATTCGAGGATTATGTGGAGCCTCTCAAGATTTATCTCCATAAATACAGGGAGATGGAAGGTGACAAGACTCCCATCGTTGGTGGCGGCAGACAGCACCACCCTGATGATCACGCCGGTGATGACGCTGCCACCGCCGGAGCCCTTTATGGTGGCGTGCCTTCTACTATGATGATGATGATGGGCGGACACGTGTATGGATCTGCCAATAATGGATCAGCATCTTCTGGAAGAACTACTAGGTAG 546 0.5128 MMGESDNESGGQGGNEFSSSSGGSGLCREQDRLLPIANVGRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLHKYREMEGDKTPIVGGGRQHHPDDHAGDDAATAGALYGGVPSTMMMMMGGHVYGSANNGSASSGRTTR* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2596 181 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 2 165 - -
Ahy1g2596 181 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Ahy1g2596 181 MobiDBLite consensus disorder prediction 1 26 - -
Ahy1g2596 181 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 165 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ahy1g2596 181 Gene3D Histone, subunit A 25 145 IPR009072 GO:0046982
Ahy1g2596 181 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ahy1g2596 181 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Ahy1g2596 181 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Ahy1g2596 181 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Ahy1g2596 181 SUPERFAMILY Histone-fold 30 131 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2596 Ahy-Chr1 104640641 104641746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2596 2 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.953 4.87e-69 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ahy1g2596 CBFD_NFYB_HMF 1.80E-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2596 K08065 - gmx:100305641 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2261 11 136039806 136040812 Ahy1g2596 1 104640641 104641746 hybridization
Ahy1g2596 1 104640641 104641746 Ahy14g0584 14 8058502 8060103 PCT
Ahy1g2596 1 104640641 104641746 Ahy4g0511 4 6610424 6611371 PCT