Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2538 ATGGAGGAGGACACAAATAGTTCCTTCCCTCTTCCCATGCTTACTACTCATCAAGAACCAATCCGCAACAACATGCTCCACACCAACAACACTGGGATATGTTACTTTATGGACATACACAACAACCACCATGGAAGCTCTTCTTCTTCTTCCTCTTCATCAGCTCTCAAGGCCAAGATCATGTCTCATCCTCACTATCATCGCCTCTTGGCTGCATACGTCAATTGTCAAAAGGTTGGAGCACCGCCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGAATCTGCAGCGGCAATGGCAGCAACTTCTTGCATAGGTGAAGATCCAGCGCTGGATCAGTTCATGGAGGCCTACTGTGAGATGCTTATCAAGTACGAGCAAGAACTCTCCAAACCCTTCAAGGAATCCATGCTTTTCCTTCAGCGCATGGAGTCCCAGTTCAAATCCCTCTCCATTTCTCCTTCCAATAACTTCGCCGGTAATGAAGGTGTTGATAGGAATGGATCATCCGAGGACGATGTTGATTTACAAAACAATGCAATAATTGATCCGCAAGCAGAGGAGCGGGAGCTGAAGGGTCAGCTGTTGCGCAAGTACAGCGGATACCTTGGTAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAAAAAGGGAAGCTCCCTAAAGAAGCAAGGCAACAGCTACTTGAATGGTGGAGCAGACATCACAAATGGCCTTACCCATCTGAATCACAGAAGGTGGCGCTTGCAGAGTCAACAGGTTTGGATCAGAAACAGATAAACAACTGGTTTATTAATCAAAGGAAACGGCATTGGAAGCCTTCGGAGGATATGCAGTTTGTGGTGATGGATCAAAGCCATCCACATTATTACATTGACAATGTTGTGGCCAATCCCTTTCCCATGGATTTTTCCCACACAATGCTTTGA 927 0.4606 MEEDTNSSFPLPMLTTHQEPIRNNMLHTNNTGICYFMDIHNNHHGSSSSSSSSSALKAKIMSHPHYHRLLAAYVNCQKVGAPPEVVARLEEACESAAAMAATSCIGEDPALDQFMEAYCEMLIKYEQELSKPFKESMLFLQRMESQFKSLSISPSNNFAGNEGVDRNGSSEDDVDLQNNAIIDPQAEERELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHHKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDQSHPHYYIDNVVANPFPMDFSHTML* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2538 308 CDD homeodomain 222 274 IPR001356 GO:0003677
Ahy1g2538 308 SUPERFAMILY Homeodomain-like 212 287 IPR009057 -
Ahy1g2538 308 SMART ELK_2 190 211 IPR005539 GO:0003677
Ahy1g2538 308 Gene3D - 215 277 - -
Ahy1g2538 308 ProSiteProfiles ELK domain profile. 190 210 IPR005539 GO:0003677
Ahy1g2538 308 SMART KNOX1_2 54 98 IPR005540 GO:0003677|GO:0005634
Ahy1g2538 308 Pfam Homeobox KN domain 230 269 IPR008422 GO:0003677|GO:0006355
Ahy1g2538 308 Pfam ELK domain 190 211 IPR005539 GO:0003677
Ahy1g2538 308 PANTHER - 42 297 - -
Ahy1g2538 308 ProSitePatterns 'Homeobox' domain signature. 248 271 IPR017970 GO:0000981|GO:0006355
Ahy1g2538 308 ProSiteProfiles 'Homeobox' domain profile. 210 273 IPR001356 GO:0003677
Ahy1g2538 308 Pfam KNOX1 domain 55 94 IPR005540 GO:0003677|GO:0005634
Ahy1g2538 308 SMART KNOX2_2 101 152 IPR005541 GO:0003677|GO:0005634
Ahy1g2538 308 SMART HOX_1 212 277 IPR001356 GO:0003677
Ahy1g2538 308 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 297 - -
Ahy1g2538 308 Pfam KNOX2 domain 104 150 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2538 Ahy-Chr1 103886561 103890850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2538 36 308 Homeobox Transcription Factor Family AT1G62360 76.042 4.34e-134 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ahy1g2538 KNOX2 2.20E-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2538 - - gmx:547796 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2319 11 137189255 137192646 Ahy1g2538 1 103886561 103890850 hybridization
Ahy1g2538 1 103886561 103890850 Ahy14g0500 14 6665561 6670574 PCT
Ahy1g2538 1 103886561 103890850 Ahy4g0418 4 5315259 5319977 PCT