Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2486 ATGGCGAGCAAGGATGTTAAGTTCCCTCCTCAGAGCCAGGAGACTCAGCCAGGGAAAGAGTACATAATGAATCCGATTCCTCAAGCCATAAGTCCAGACTACAAGCCCTCCAACAAGCTCTGGGGTAAGGTGGCTTTGGTGACAGGAGGTGATTCTGGGATAGGCAGAGCAGTGTGTGTGTGTTTTGCAAAAGAGGGTGCAACCGTTGCATTTACATACGTTAAGGGCCACGAGGACAGGGACAAGGATGACACACTTAAGATGCTGCTAGAATCCAAGACAAGTGATGCACAAGATCCTTTGGCAATAGCTGCGGATATTGGATTTGATGAGAACTGCAAGCAGGTTGTTGATCATGTTGTCCAAGAATATGGACGCATTGATATTCTAGTTAACAATGCAGCCGAGCAGCACTTGACTAAATCGGTCGAGGAAATCACCCAAGATCAACTAGAAAGAGTCTTCAAGACCAATATGTTTTCGCAGTTCTACTTGGTCAGGCATGCACTGATTCACATGAAAGAAGGGAGTTCCATTATCAACTCAACCTCAGTTAATGCCTACAGTGGAAGTCCTCAAGCACTGGACTATACCGCAACGAAGGGAGCCATTGTGGCCTTCACAAGAGGGCTTGCTCGGATGCTGGTGAGCAAGGGGATTCGGGTGAATGCGGTGGCGCCGGGTCCGGTTTGGACGCCAATACAACCAGCTTCCATGCCTGCCGAGATGATTCAGAGTTTAGGGTCAGAGGTGCCAATGAAGCGAGCAGCTCAACCATCGGAGATTGCACCCTGTTATTTGTTCTTGGCATCCCTTCAGGACTCTTCTTACTTTAGTGGCCAAGTTCTCCATCCAAATGGTGGCGTGATCAAGATCCTCATTCCATCCATGTCCATGGAGACTCACAGTTTCTCCCTTGGGGTCAGGGTCGCGCCATTTGTAAAGCGAACTGTAACGGTTTATCATGTGCCTCGCTTACGTAACCTTAATCGAACCCACCCTGCAGCTCAGTGCATTCTTCCACAACCACCACTTACTAACCATTCTCCCACTTTGCGAGATATATGCCAGCCTCATGTCCCCACCCATATTTTGCAAAGGATGGAAGAGATTGGATATGTGATGCCTACAGATGTTCAGAGGGAGGCTTTGCCTCATCTTTTCTCTGGCCGTGACTGTATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTACATACCTGCTTTTGATTTATTCCATCATCAACACTTTGAAATCTTCTGTGCAAGCGCTTGTTGTCGTCCCCACTCGTGAACTTGGCATGCAAGTCACTAAAGTTGCAAGGATGTTGGCAGCAAAGCCAACTGGAGTCGACGGGGAGCAGAAGTCGTGTACCATCATGGCTCTCTTGGATGGAGGAACATTGAGAAGACACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAGTAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACAAATTTTCTTGCTTGAATCTGTGCGGGTGCTAATTGTTGATGAGGTTGACTTCATTTTCAGTTCTTCAAAGCAAGTTAGTTCTCTTAGAAAGCTTTTGACTTCATATTCATCGTGCAATAACCGTCAGACAGTTTTTGCAAGTGCATCTATACCACAGCACAGACGATTTCTTCACGATTGTGTGCAGCAAAAATGGACAAAGAGTGATGTGATCCATATCCATGTCAGTCCAGTGGAGCCCATGCCATCTCGCCTGTGTCATAGATTTATAATATGCAATAACAAAAGGAAACTACAAACCCTATTATCCTTGATTCAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGGTGAACAGTCTGAGAAGTCCAAAAAGGCTGGAAACGCTCCATCAACAGACCTTGTCATTGACTTTTTGAAGACATCATATGAAGGGCCTTTAGATATTGTCCTTCTCGAGGATGACATGAATTTCAACTCACGCGCAGTTTCATTGTTGGAGGTTCGAAAAGGAGGTGGATATCTGCTTGTAGCAACAGATATAGCTGCTAGAGGAGTTGACCTTCCTGAAATGTCTCATATCTACAACTTTGACTTGCCAAGGACTGCCATTGATTATCTTCATCGAGCAGGCAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCACCATTACAGTTCCCGAGGAGAGGTTTGTTCTGCAGAAATATGAAAATGAGTTGATGTTTAACTCTGAGGAGCTTATTCCATAA 2259 0.4555 MASKDVKFPPQSQETQPGKEYIMNPIPQAISPDYKPSNKLWGKVALVTGGDSGIGRAVCVCFAKEGATVAFTYVKGHEDRDKDDTLKMLLESKTSDAQDPLAIAADIGFDENCKQVVDHVVQEYGRIDILVNNAAEQHLTKSVEEITQDQLERVFKTNMFSQFYLVRHALIHMKEGSSIINSTSVNAYSGSPQALDYTATKGAIVAFTRGLARMLVSKGIRVNAVAPGPVWTPIQPASMPAEMIQSLGSEVPMKRAAQPSEIAPCYLFLASLQDSSYFSGQVLHPNGGVIKILIPSMSMETHSFSLGVRVAPFVKRTVTVYHVPRLRNLNRTHPAAQCILPQPPLTNHSPTLRDICQPHVPTHILQRMEEIGYVMPTDVQREALPHLFSGRDCILHAQTGSGKTLTYLLLIYSIINTLKSSVQALVVVPTRELGMQVTKVARMLAAKPTGVDGEQKSCTIMALLDGGTLRRHKSWLKAEPPTVVVATVGSLCQMLERQIFLLESVRVLIVDEVDFIFSSSKQVSSLRKLLTSYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVIHIHVSPVEPMPSRLCHRFIICNNKRKLQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTDLVIDFLKTSYEGPLDIVLLEDDMNFNSRAVSLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDMKCTVTTITVPEERFVLQKYENELMFNSEELIP* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2486 752 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Ahy1g2486 752 PRINTS Glucose/ribitol dehydrogenase family signature 44 61 IPR002347 -
Ahy1g2486 752 PRINTS Glucose/ribitol dehydrogenase family signature 252 272 IPR002347 -
Ahy1g2486 752 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Ahy1g2486 752 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Ahy1g2486 752 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Ahy1g2486 752 SMART helicmild6 632 716 IPR001650 -
Ahy1g2486 752 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 384 566 IPR014001 -
Ahy1g2486 752 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Ahy1g2486 752 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Ahy1g2486 752 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Ahy1g2486 752 Pfam Enoyl-(Acyl carrier protein) reductase 52 289 - -
Ahy1g2486 752 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 335 751 - -
Ahy1g2486 752 Pfam DEAD/DEAH box helicase 377 550 IPR011545 GO:0003676|GO:0005524
Ahy1g2486 752 CDD SDR_c1 17 290 - -
Ahy1g2486 752 CDD SF2_C_DEAD 585 714 - -
Ahy1g2486 752 CDD DEADc 364 559 - -
Ahy1g2486 752 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 42 289 IPR036291 -
Ahy1g2486 752 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 335 751 - -
Ahy1g2486 752 Gene3D - 2 289 - -
Ahy1g2486 752 Pfam Helicase conserved C-terminal domain 595 714 IPR001650 -
Ahy1g2486 752 Gene3D - 580 751 IPR027417 -
Ahy1g2486 752 Gene3D - 349 567 IPR027417 -
Ahy1g2486 752 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 595 752 IPR001650 -
Ahy1g2486 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 718 IPR027417 -
Ahy1g2486 752 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Ahy1g2486 752 SMART ultradead3 372 582 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2486 Ahy-Chr1 103273838 103281015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2486 346 741 Eukaryotic Initiation Factors Gene Family AT1G72730 26.420 3.58e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2486 - - ahf:112763379 1489.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2423 11 139044030 139045738 Ahy1g2486 1 103273838 103281015 hybridization