Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2479 ATGGGAATCTCTTGGAGCAACACCAACAGTAACAGTAACAGAAGAAGAAGAAACAATTACCCACCTCCTTTTCCTCCTCCGTACTACTACTCTTCTGATGCTCATCCTCCGCAGCTTCCACCGCCGCCGCCGCCTTCTCAGCCCCCACCGCCGCAAGGCTATTACTTTCCCCCAACCAACCCTTCCACCACTCCCTACGTCGGTACCCATCCTCTGCCTCCTGCTCCTCCTCCTCAGACCCATTCCTTCTATTATTCAAATGGCTACGCCACCCCTACCACCGCCGCCGCCACCACCAACGCTCCTAACTATGCCAATCGCCTTCACTACCACCCTTACTATGCAAATCAGGGTGCTCCCGCCTGGGCCCCTGTTCGCCCCCCCGTTGCTGCTGCCGCCGCCGCAGCTCCACCGCCCTATGTCGACCATCAAACCACTAAGAAGATTAGGAACGACGTGAACTTGCATAAAGATACTTTGCGCCTGGAGATTGACGAGCTCAACCCTGATCACCACTTGGTTTCTTTCGTTTTTGATGCCCTCTTTGATGGCAGATTTACTATCTACTACTTAGCCAAAGAAGAAGAAAAGTGTAGGTTTATTCCACTATATCCCGATGCATTTGCGCCGATCTCATTCCCCTTTCAAAAGGGAGTTGGCCAGAAATTTTGTCAGCCTCCTGGAACGGGCATTGACCTTGGTTTCTTTGAGTTAGAGGATCTTGCAAAGCCCTCACCTGAAGAGGATCTGTTTCCCCTTGTAATATGTGCTGAAACAAGTATGAGAACTTCAGAAGATGAAACTTCTGATGGTTCCACAATTGATGCATCTCCTCACATGCAAATAACTCAAGCTGTCTTAGTGAAAAGCAACGGTATTGGTCCTTTCGAGGTAAAAGTAATTAGGCAGATTCTCTGGATTGATGGAGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAGTGGCTCAACAGCTGCAGATTTTGATGATAATGATCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCAAAGGACACTGCTGTCTTACCTTGCCGACATATGTGTATGTGCAGCGAGTGTGCAAAAGCATTACGGCTTCAATCCAATAAGTGCCCAATATGCCGCCAACCTATTGAGGAGCTCATGGAAATCAAGATAAACAATGATGACAAATGA 1182 0.4822 MGISWSNTNSNSNRRRRNNYPPPFPPPYYYSSDAHPPQLPPPPPPSQPPPPQGYYFPPTNPSTTPYVGTHPLPPAPPPQTHSFYYSNGYATPTTAAATTNAPNYANRLHYHPYYANQGAPAWAPVRPPVAAAAAAAPPPYVDHQTTKKIRNDVNLHKDTLRLEIDELNPDHHLVSFVFDALFDGRFTIYYLAKEEEKCRFIPLYPDAFAPISFPFQKGVGQKFCQPPGTGIDLGFFELEDLAKPSPEEDLFPLVICAETSMRTSEDETSDGSTIDASPHMQITQAVLVKSNGIGPFEVKVIRQILWIDGVRYELRELYGIGSGSTAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQPIEELMEIKINNDDK* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2479 393 MobiDBLite consensus disorder prediction 19 58 - -
Ahy1g2479 393 SUPERFAMILY RING/U-box 337 383 - -
Ahy1g2479 393 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 337 377 IPR045195 -
Ahy1g2479 393 ProSiteProfiles Zinc finger RING-type profile. 338 377 IPR001841 -
Ahy1g2479 393 SMART ring_2 338 376 IPR001841 -
Ahy1g2479 393 MobiDBLite consensus disorder prediction 1 86 - -
Ahy1g2479 393 Pfam Zinc finger, C3HC4 type (RING finger) 336 382 - -
Ahy1g2479 393 PANTHER MAHOGUNIN 1 392 IPR045194 GO:0061630
Ahy1g2479 393 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 392 - -
Ahy1g2479 393 MobiDBLite consensus disorder prediction 1 18 - -
Ahy1g2479 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2479 Ahy-Chr1 103170690 103174142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2479 100 393 C3H Transcription Factor Family AT3G06140 57.285 1.05e-115 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2479 - - adu:107465273 685.256