Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2421 ATGGCGAGGTACCGAAGCCGGAGCAGAAGCTACAGCCCTCGCCGCCGGAGCAGAACACCGCCGCGCGAACGCAAGCGCTACGACGACGATCGCTACGGCGACAGCAGGTCCTACAGGGATCGCCGCTCTCCACTCCCTTCTGGCCTTCTTGTTCGTAATCTCCCCCTTGATGCTAGGCCTGAAGATCTTAGGGGTCCATTTGAGCGCTTTGGACCTGTGAAGGATGTTTATCTTCCTAAGAATTATTACACTGGTGAGCCTCGGGGATTTGGGTTTGTGAAGTATCGATATGGTGAAGATGCAGCTGAGGCAAAGCAACAGCTTAATCATACCACCATTGGTGGGCGTGAAATAAGAATTGTGTTTGCCGAGGAAAACCGGAAAACCCCTCAGGAGATGCGTGTCATTTCTCGTGGAAGTGGTCGACAAGGAGGTAGCAGGAGGAGGAATCGGTCAAGGTCCCCAAGACGCCGATATAGATCTTATTCTCGGTCTCCAACACCAGCTCGAGATTATTCAAGGAGTGGCAGGGGCAAGGGCAGGGATAGGGAAGATTACTATTCTCCTGACCGATCAAGATCTTATTCTAGGTCACGCTCTCCTAGTGATGGCAAGGACTATAGGAGGTCTCCACATCCCAGGTCTCGTTCTCCTAGTGATGCGAAGGACTATCGGAGATCTCACTCTCCTAGTGATGGGAAGGGCTACAGGAGGTCCCCACATCCCAGGTCTCCCTCTCCTAGAGCTGAGAAGGATTACAGGAGGTCTCCGAGTCCCAGGGAGAATGGTCGGAGTCCTAATGAGAAGAGGGCTCGCACACCTAGCAGATCAAAGAGTCCTAGGCGTAATGGCCGCAGTCCTTCTAGATCTGGTTCACAATCTTACAGTCCACGCTGA 897 0.5307 MARYRSRSRSYSPRRRSRTPPRERKRYDDDRYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRGPFERFGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQQLNHTTIGGREIRIVFAEENRKTPQEMRVISRGSGRQGGSRRRNRSRSPRRRYRSYSRSPTPARDYSRSGRGKGRDREDYYSPDRSRSYSRSRSPSDGKDYRRSPHPRSRSPSDAKDYRRSHSPSDGKGYRRSPHPRSPSPRAEKDYRRSPSPRENGRSPNEKRARTPSRSKSPRRNGRSPSRSGSQSYSPR* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2421 298 SMART rrm1_1 48 121 IPR000504 GO:0003723
Ahy1g2421 298 Gene3D - 21 164 IPR012677 -
Ahy1g2421 298 MobiDBLite consensus disorder prediction 144 160 - -
Ahy1g2421 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Ahy1g2421 298 MobiDBLite consensus disorder prediction 1 48 - -
Ahy1g2421 298 MobiDBLite consensus disorder prediction 124 298 - -
Ahy1g2421 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Ahy1g2421 298 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Ahy1g2421 298 SUPERFAMILY RNA-binding domain, RBD 38 137 IPR035979 GO:0003676
Ahy1g2421 298 MobiDBLite consensus disorder prediction 284 298 - -
Ahy1g2421 298 MobiDBLite consensus disorder prediction 1 21 - -
Ahy1g2421 298 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 275 - -
Ahy1g2421 298 MobiDBLite consensus disorder prediction 174 274 - -
Ahy1g2421 298 SMART rrm2_1 48 121 IPR003954 GO:0003676
Ahy1g2421 298 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 275 - -
Ahy1g2421 298 MobiDBLite consensus disorder prediction 22 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2421 Ahy-Chr1 102332236 102336044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2421 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 45.763 3.51e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2421 K12900 - gmx:100788749 256.529