Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2398 ATGAGGGGATCTTATAAGAAAAACCTGTTCTTGTACCACCACACCGTCTTCACAAGAACCTCATCACCCTCATTTCTGATCCCTTCACCATCTTCCATATTCCGTGCTCCCAATTACGCCACAGTCACAGAAATCCTGGAAAAACAATCCGTTACGGTGAATTACCTCGTCAACAATTGTGGGTTCCTCCCAGATTCGGCTCTTCATGCTTCGAAAGACGTCCTTTTTAAGAGTCCCGAGAAACCCGACTCAGTCATCGCACTCTTCAGGAGCTTCGGTTTCTCAGATTTGCAGATTCATAATGTCATTCGGAAATCGCCCGGGATTCTCCTCTGCAAAACCAAAGAGACCCTCTTGCCCAAGCTCCAGTTCCTCATCTCCAAAGGTGCTTCAAAATTACAACTTGCCCGCATCATCGATCTCAACCCTCTAATCTTGAAAAGAAGCTTAGAGAAACACCTGATCCCCGCTTTCGATTTGTTGAACAATTTCATTCGTTCTGAAGAAAGGACCGTTGCTTCTATCTTACGTGCTGGCCAAATTTTAACTTGTTCTAGGTCGCTTCGAAATATTAACATGTTGGTTGATTTAGGGGTCCGTAAGATAAGCATGGCAAGGCTAATTCGGCAGTGGCCTTGGTTGCTTTTATGCAATTCTGAAGTTCGCCTTAAGAGTATAGTAGATGAAGTCATTAAAATGGGGGTTGATCCCAGCAAGGCTAATTTCGTTCCTGCATTGTATGCTACGTATCTTCCAAAGTCCATGTGGGATAAGAAGGTTGAGTTGTTCAAGAGGTTTGGATTAACTGACGACAACATTCTTGAGGCGTTTGTGAAGCACTCTTGCTGTATGCTGATATCTGTGCAGAAAACTGAGGCCTGCATTGAATTCTTTGTCAAAGAACTCGGTTGGAAGCCTGTTGATGTCACCAATTATCCGGTTCTTCTCTCGCTGAATTTGGAGAAAAGGCTTGTTCCCAGGGCTGCTGTCTTGAAGATTCTTATGGCCAATGGTGCCATTAACAGTGGTAAGCATTTGTTAGCATATACTGTTTCGGAAGAGATGTTCTTTAAGAAGTATGTGAATCGTGGTAAGGATCAAGCACCGGAGTTATTGAAGCTGTATCGGGAGAAAATGAATCTTCCAGTAATGGATAGTAAATTGATGTCTTGA 1173 0.4339 MRGSYKKNLFLYHHTVFTRTSSPSFLIPSPSSIFRAPNYATVTEILEKQSVTVNYLVNNCGFLPDSALHASKDVLFKSPEKPDSVIALFRSFGFSDLQIHNVIRKSPGILLCKTKETLLPKLQFLISKGASKLQLARIIDLNPLILKRSLEKHLIPAFDLLNNFIRSEERTVASILRAGQILTCSRSLRNINMLVDLGVRKISMARLIRQWPWLLLCNSEVRLKSIVDEVIKMGVDPSKANFVPALYATYLPKSMWDKKVELFKRFGLTDDNILEAFVKHSCCMLISVQKTEACIEFFVKELGWKPVDVTNYPVLLSLNLEKRLVPRAAVLKILMANGAINSGKHLLAYTVSEEMFFKKYVNRGKDQAPELLKLYREKMNLPVMDSKLMS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2398 390 Pfam mTERF 87 225 IPR003690 GO:0003690|GO:0006355
Ahy1g2398 390 Pfam mTERF 190 347 IPR003690 GO:0003690|GO:0006355
Ahy1g2398 390 Gene3D Transcription termination factor 3, mitochondrial 63 187 IPR038538 -
Ahy1g2398 390 Gene3D Transcription termination factor 3, mitochondrial 188 368 IPR038538 -
Ahy1g2398 390 SMART mt_12 100 131 IPR003690 GO:0003690|GO:0006355
Ahy1g2398 390 SMART mt_12 205 236 IPR003690 GO:0003690|GO:0006355
Ahy1g2398 390 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Ahy1g2398 390 SMART mt_12 136 167 IPR003690 GO:0003690|GO:0006355
Ahy1g2398 390 SMART mt_12 172 200 IPR003690 GO:0003690|GO:0006355
Ahy1g2398 390 SMART mt_12 306 337 IPR003690 GO:0003690|GO:0006355
Ahy1g2398 390 PANTHER CGI-12 PROTEIN-RELATED 40 381 IPR003690 GO:0003690|GO:0006355
Ahy1g2398 390 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 40 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2398 Ahy-Chr1 102079078 102080250 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ahy1g2398 mTERF 8.80E-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2398 K15032 - twl:120012851 271.937