Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy1g2392 | ATGGAACGGTACGGCCGTCCCGGCGAAGGGCCGCAGCCTGATCCGCCGCCGGAGTGGAACGTCGGCGCCGGCGACACGGGGCTCGAAGAGTCTATGTGGAAGCTTGGATTGGGTGGTGCCACCGAATCGTACCCTCAGAGGCCTGATGAAGCTGATTGTATCTATTATCTCAAGACAGGTTTTTGCGGCTATGGTTCGCGTTGTCGGTTCAACCACCCACGTGACCGTGGCGCGGTTATTGGAGCTGCCAGGAGTGGAGGGGAGTATCCGGAGCGTGCGGGCCAGCCTCTATGCCAGTATTTTATGAGGACAGGATCATGCAAATTCGGTGCATCTTGCAAGTACAACCATCCTAGGCAGGCAGCAGGAACTCCTACCCTTGTCTCACTAAATTATTATGGATATCCGTTGCGAGTGGGAGAGAAAGAGTGTTCCTATTACGTGAAAACTGGGCAATGCAAGTTTGGTGCTACTTGTAAATTCCATCATCCACAGCCTGCAGGTGTCCAAATTCCGGCACCATCACCAGTTCCCCCGGTTTCACCTCTACCTGTACAGGTACCTTCTCCATTATATCCAACCGTGCAGCCTCCATCTGGTCCTTCGCAACAGCAATATAGTGTACTGGTTGCAAGGCCTCCGTTGCTGCCTGGCTCATTAGTCCAGGGCCCTTATGGGCCTGTGGTAGTGTCCCCTGCCATGGTCCCCTTTCCAGGCTGGAATCCTTATCAGGCTCAAGCAACAAGCCCCCTACTTCCCTCTAGTACACCATCTAATGTTGGTCCAACACAGCTTTACAGGATAACCCAGCTGCCTTCTCAGGCAACTGGGTATTCTGCACCTTATCAACCTTCTGGCCCCTCTGTTGATCCTTCAGGTAGTAGTACTCAGAAGGAGAACCCATATCCCGAAAGGCCTGATCAACCAGAATGTCAGTATTACATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAGATATCATCATCCATCAGACCTTAATGCACCGAAGGGAAATGTGGCCCTTAGTCCTGTGGGTCTCCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATACGCAGCGTGGAATCTGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCCATGGGATCTCTCAGTTACAGCCCATCTGCTTCTTCCTTGGCTGATATGCCGGTTGCACCATATCCCGTGGGTTCCTCAATGGGCACTCTTGCTCCATCATCATCTTCATCAGAGTTGCGGCCTGAACTTGCTTCAGGATTGAGCAAGGAGTCTGTTTCATCCAGAATGTCTTCATCGATGAGCACTTCAAGTGGATCAGTTGGCTTGACCTTGTCAACTGCAGGACCAATTTCTCAATCGGGCACCCAAGCCTCTGCTCAGAGTTCCAGTTCTTCAGCAACTGCCAGCAGCGCCGCAACAAGCAGTGCTGCATCTCACACCTCAAGCTAA | 1461 | 0.5202 | MERYGRPGEGPQPDPPPEWNVGAGDTGLEESMWKLGLGGATESYPQRPDEADCIYYLKTGFCGYGSRCRFNHPRDRGAVIGAARSGGEYPERAGQPLCQYFMRTGSCKFGASCKYNHPRQAAGTPTLVSLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQIPAPSPVPPVSPLPVQVPSPLYPTVQPPSGPSQQQYSVLVARPPLLPGSLVQGPYGPVVVSPAMVPFPGWNPYQAQATSPLLPSSTPSNVGPTQLYRITQLPSQATGYSAPYQPSGPSVDPSGSSTQKENPYPERPDQPECQYYMKTGECKFGPSCRYHHPSDLNAPKGNVALSPVGLPLRPGAPPCTHYTQRGICKFGPACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSELRPELASGLSKESVSSRMSSSMSTSSGSVGLTLSTAGPISQSGTQASAQSSSSSATASSAATSSAASHTSS* | 487 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy1g2392 | 486 | ProSiteProfiles | Zinc finger C3H1-type profile. | 138 | 166 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | SUPERFAMILY | CCCH zinc finger | 355 | 381 | IPR036855 | GO:0046872 | |
Ahy1g2392 | 486 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Ahy1g2392 | 486 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 120 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | MobiDBLite | consensus disorder prediction | 404 | 486 | - | - | |
Ahy1g2392 | 486 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 354 | 378 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 307 | 331 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 95 | 119 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 49 | 74 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 141 | 165 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | SUPERFAMILY | CCCH zinc finger | 308 | 332 | IPR036855 | GO:0046872 | |
Ahy1g2392 | 486 | PANTHER | PROTEIN PHOSPHATASE RELATED | 1 | 471 | - | - | |
Ahy1g2392 | 486 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 1 | 471 | - | - | |
Ahy1g2392 | 486 | SUPERFAMILY | CCCH zinc finger | 95 | 120 | IPR036855 | GO:0046872 | |
Ahy1g2392 | 486 | Gene3D | - | 121 | 171 | - | - | |
Ahy1g2392 | 486 | SUPERFAMILY | CCCH zinc finger | 49 | 75 | IPR036855 | GO:0046872 | |
Ahy1g2392 | 486 | Gene3D | - | 303 | 388 | - | - | |
Ahy1g2392 | 486 | Gene3D | - | 45 | 120 | - | - | |
Ahy1g2392 | 486 | MobiDBLite | consensus disorder prediction | 276 | 310 | - | - | |
Ahy1g2392 | 486 | ProSiteProfiles | Zinc finger C3H1-type profile. | 47 | 75 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | ProSiteProfiles | Zinc finger C3H1-type profile. | 351 | 379 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | SMART | c3hfinal6 | 305 | 332 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | SMART | c3hfinal6 | 47 | 74 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | SMART | c3hfinal6 | 92 | 119 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | SMART | c3hfinal6 | 351 | 378 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | SMART | c3hfinal6 | 140 | 165 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | ProSiteProfiles | Zinc finger C3H1-type profile. | 305 | 333 | IPR000571 | GO:0046872 | |
Ahy1g2392 | 486 | SUPERFAMILY | CCCH zinc finger | 139 | 166 | IPR036855 | GO:0046872 | |
Ahy1g2392 | 486 | MobiDBLite | consensus disorder prediction | 276 | 302 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy1g2392 | Ahy-Chr1 | 102014146 | 102018674 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy1g2392 | 1 | 453 | C2H2 Transcription Factor Family | AT5G18550 | 55.388 | 4.59e-154 | 444 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Ahy1g2392 | zf-CCCH | 9.50E-08 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy1g2392 | - | - | gmx:100789405 | 698.353 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Ahy11g2533 | 11 | 141158013 | 141162395 | Ahy1g2392 | 1 | 102014146 | 102018674 | hybridization | |
Ahy1g2392 | 1 | 102014146 | 102018674 | Ahy20g0176 | 20 | 1513995 | 1520619 | PCT | |
Ahy1g2392 | 1 | 102014146 | 102018674 | Ahy10g0011 | 10 | 200816 | 207493 | PCT | |
Ahy20g0176 | 20 | 1513995 | 1520619 | Ahy1g2392 | 1 | 102014146 | 102018674 | PCT | |
Ahy10g0011 | 10 | 200816 | 207493 | Ahy1g2392 | 1 | 102014146 | 102018674 | PCT |