Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2392 ATGGAACGGTACGGCCGTCCCGGCGAAGGGCCGCAGCCTGATCCGCCGCCGGAGTGGAACGTCGGCGCCGGCGACACGGGGCTCGAAGAGTCTATGTGGAAGCTTGGATTGGGTGGTGCCACCGAATCGTACCCTCAGAGGCCTGATGAAGCTGATTGTATCTATTATCTCAAGACAGGTTTTTGCGGCTATGGTTCGCGTTGTCGGTTCAACCACCCACGTGACCGTGGCGCGGTTATTGGAGCTGCCAGGAGTGGAGGGGAGTATCCGGAGCGTGCGGGCCAGCCTCTATGCCAGTATTTTATGAGGACAGGATCATGCAAATTCGGTGCATCTTGCAAGTACAACCATCCTAGGCAGGCAGCAGGAACTCCTACCCTTGTCTCACTAAATTATTATGGATATCCGTTGCGAGTGGGAGAGAAAGAGTGTTCCTATTACGTGAAAACTGGGCAATGCAAGTTTGGTGCTACTTGTAAATTCCATCATCCACAGCCTGCAGGTGTCCAAATTCCGGCACCATCACCAGTTCCCCCGGTTTCACCTCTACCTGTACAGGTACCTTCTCCATTATATCCAACCGTGCAGCCTCCATCTGGTCCTTCGCAACAGCAATATAGTGTACTGGTTGCAAGGCCTCCGTTGCTGCCTGGCTCATTAGTCCAGGGCCCTTATGGGCCTGTGGTAGTGTCCCCTGCCATGGTCCCCTTTCCAGGCTGGAATCCTTATCAGGCTCAAGCAACAAGCCCCCTACTTCCCTCTAGTACACCATCTAATGTTGGTCCAACACAGCTTTACAGGATAACCCAGCTGCCTTCTCAGGCAACTGGGTATTCTGCACCTTATCAACCTTCTGGCCCCTCTGTTGATCCTTCAGGTAGTAGTACTCAGAAGGAGAACCCATATCCCGAAAGGCCTGATCAACCAGAATGTCAGTATTACATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAGATATCATCATCCATCAGACCTTAATGCACCGAAGGGAAATGTGGCCCTTAGTCCTGTGGGTCTCCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATACGCAGCGTGGAATCTGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCCATGGGATCTCTCAGTTACAGCCCATCTGCTTCTTCCTTGGCTGATATGCCGGTTGCACCATATCCCGTGGGTTCCTCAATGGGCACTCTTGCTCCATCATCATCTTCATCAGAGTTGCGGCCTGAACTTGCTTCAGGATTGAGCAAGGAGTCTGTTTCATCCAGAATGTCTTCATCGATGAGCACTTCAAGTGGATCAGTTGGCTTGACCTTGTCAACTGCAGGACCAATTTCTCAATCGGGCACCCAAGCCTCTGCTCAGAGTTCCAGTTCTTCAGCAACTGCCAGCAGCGCCGCAACAAGCAGTGCTGCATCTCACACCTCAAGCTAA 1461 0.5202 MERYGRPGEGPQPDPPPEWNVGAGDTGLEESMWKLGLGGATESYPQRPDEADCIYYLKTGFCGYGSRCRFNHPRDRGAVIGAARSGGEYPERAGQPLCQYFMRTGSCKFGASCKYNHPRQAAGTPTLVSLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQIPAPSPVPPVSPLPVQVPSPLYPTVQPPSGPSQQQYSVLVARPPLLPGSLVQGPYGPVVVSPAMVPFPGWNPYQAQATSPLLPSSTPSNVGPTQLYRITQLPSQATGYSAPYQPSGPSVDPSGSSTQKENPYPERPDQPECQYYMKTGECKFGPSCRYHHPSDLNAPKGNVALSPVGLPLRPGAPPCTHYTQRGICKFGPACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSELRPELASGLSKESVSSRMSSSMSTSSGSVGLTLSTAGPISQSGTQASAQSSSSSATASSAATSSAASHTSS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2392 486 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Ahy1g2392 486 SUPERFAMILY CCCH zinc finger 355 381 IPR036855 GO:0046872
Ahy1g2392 486 MobiDBLite consensus disorder prediction 1 25 - -
Ahy1g2392 486 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Ahy1g2392 486 MobiDBLite consensus disorder prediction 404 486 - -
Ahy1g2392 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 378 IPR000571 GO:0046872
Ahy1g2392 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 331 IPR000571 GO:0046872
Ahy1g2392 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Ahy1g2392 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Ahy1g2392 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Ahy1g2392 486 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Ahy1g2392 486 PANTHER PROTEIN PHOSPHATASE RELATED 1 471 - -
Ahy1g2392 486 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 471 - -
Ahy1g2392 486 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Ahy1g2392 486 Gene3D - 121 171 - -
Ahy1g2392 486 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Ahy1g2392 486 Gene3D - 303 388 - -
Ahy1g2392 486 Gene3D - 45 120 - -
Ahy1g2392 486 MobiDBLite consensus disorder prediction 276 310 - -
Ahy1g2392 486 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Ahy1g2392 486 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872
Ahy1g2392 486 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Ahy1g2392 486 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Ahy1g2392 486 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Ahy1g2392 486 SMART c3hfinal6 351 378 IPR000571 GO:0046872
Ahy1g2392 486 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Ahy1g2392 486 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Ahy1g2392 486 SUPERFAMILY CCCH zinc finger 139 166 IPR036855 GO:0046872
Ahy1g2392 486 MobiDBLite consensus disorder prediction 276 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2392 Ahy-Chr1 102014146 102018674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2392 1 453 C2H2 Transcription Factor Family AT5G18550 55.388 4.59e-154 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy1g2392 zf-CCCH 9.50E-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2392 - - gmx:100789405 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2533 11 141158013 141162395 Ahy1g2392 1 102014146 102018674 hybridization
Ahy1g2392 1 102014146 102018674 Ahy20g0176 20 1513995 1520619 PCT
Ahy1g2392 1 102014146 102018674 Ahy10g0011 10 200816 207493 PCT
Ahy20g0176 20 1513995 1520619 Ahy1g2392 1 102014146 102018674 PCT
Ahy10g0011 10 200816 207493 Ahy1g2392 1 102014146 102018674 PCT