Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2385 ATGGATGAGATTGGAGAGAGTAGCATAAAGGAACAAGAGAAGTTGGTGCCAATAGCGAACGTTGGTCGAATCATGAAGCAAATTCTTCCCCACAACGCCAAGGTTTCCAAGGAAGCCAAAGAAACCATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTGACTAGCGAGGCGTCCGACAAGTGCCGGAAGGAGCGGAGGAAGACGGTTAATGGAGATGACATATGCTTCGCTTTGGCCTCTCTTGGCTTCGATGATTATGCTCATCCTATCACAAGGTATTTGCAGAGATTTAGAGAACTTGATCTTGACCATCATCACACTAGAACTAATAGTATTAATCAAGAAAGAGATACACGGAATAGCACCTTTGATGATGATGATGAATAG 390 0.4436 MDEIGESSIKEQEKLVPIANVGRIMKQILPHNAKVSKEAKETMQECVSEFISFVTSEASDKCRKERRKTVNGDDICFALASLGFDDYAHPITRYLQRFRELDLDHHHTRTNSINQERDTRNSTFDDDDE* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2385 129 PRINTS CCAAT-binding transcription factor subunit A signature 43 61 - -
Ahy1g2385 129 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Ahy1g2385 129 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Ahy1g2385 129 Gene3D Histone, subunit A 3 129 IPR009072 GO:0046982
Ahy1g2385 129 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 6 121 - -
Ahy1g2385 129 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ahy1g2385 129 SUPERFAMILY Histone-fold 12 119 IPR009072 GO:0046982
Ahy1g2385 129 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 16 79 IPR003958 -
Ahy1g2385 129 ProSitePatterns NF-YB/HAP3 subunit signature. 46 62 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2385 Ahy-Chr1 101917368 101917975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2385 9 109 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.816 1.55e-52 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ahy1g2385 CBFD_NFYB_HMF 5.70E-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2385 K08065 - gmx:100794513 173.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2541 11 141277020 141277454 Ahy1g2385 1 101917368 101917975 hybridization
Ahy1g2385 1 101917368 101917975 Ahy14g1086 14 19525147 19526147 PCT
Ahy1g2385 1 101917368 101917975 Ahy4g0991 4 19573317 19574159 PCT
Ahy14g1086 14 19525147 19526147 Ahy1g2385 1 101917368 101917975 PCT
Ahy4g0991 4 19573317 19574159 Ahy1g2385 1 101917368 101917975 PCT