Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2382 ATGTTTCACTCAAAGCATCACTCTCTTACAAGAGCCCTTCTCTTCATCCTCAGCCACAACCCCCCTCTTCCATCGCCATCCACAAAATCTTACCTTCTTCTTCTTCGGCCACAAACACGCCGCCACTCAACCACCTCCACTTCCGATTACCACCACTCTTTCACTGTCTCCTACCTCACCACCAAGTGCGGCTTCTCCCATGAAGACGCTCTCAGAGCAAACAAGCGCGTTCGCTTTGACACCCCCGTCAAGCCAGATTCCGTCATCTCCTTCTTCAAAGCCCATGGTTTCTCCCTCTCCCAAATCGCCACCATCATGTGCAAGATTCCCGTGGTGCTCACATATGACCCTACCAAAGCGATCTTGCCAAAGTTTCAATTTTTGGCATCCAAAGGTGCTTCTCCCTCTGACATTGTACTCATGACCACAAGGAGTCCCAACTTCCTGCTTCGAAGCCTTAACCATATAGTATCCTTCTACGAATTGGTAAGGAGGTTCTCTCCCTCTGATCTTAAAGCCATTGCTTATCTAACTGGATGCCCATCATCCATTGCTGATGTTCGTGTGGCTCAAAATGTGAAAATGCTGCTTGATGAAGGGTTGACCAATGCCAACATTCACCATTTGCTTAGAACTAGGCCTTCTGTGCTGTCTTCTGCTGATTTGAAGAAAACAGTTGAGGAAGTGAAGCAATTGGGGTTTGATCCTTCACAGTCTTATTTCAGTGTGGTGTTGCTCACCAAAAGGGCCGTAACTAAGTCCCGATGGGATGCTAAAGTTCATGTCCTTAAGAAATGGGGCTGGTCCGAACAAGATTTTTCAGAGGCCTATAGGAGGCACCCTCAGTTTATGCTACGTTCCGAGGACAAACTCAATGCAGTGATGAGCTTTTGGATCAGTAATCTCGGCTGGGATTCTTCAGCGTTTCGCATTAGACCGGTGCTTTTTGGATACAGTTTGGAGAAGAGGCTTATTCCTAGAGCTAAGGTTATCAAATATCTTCTCTCCAATGGTTTGATGAAGAAGAATGCTAGCATAATCACACCATTTTCTTTGACTGAGAAGCTGTTCCTCGAGAAGTGTATCACATGTTTTGAGGAGAAAGATAGGTTTTGTTTCAGATTCGCAGCTTGCCATCTTCATCTTCATGTCGACGAGTGA 1161 0.4617 MFHSKHHSLTRALLFILSHNPPLPSPSTKSYLLLLRPQTRRHSTTSTSDYHHSFTVSYLTTKCGFSHEDALRANKRVRFDTPVKPDSVISFFKAHGFSLSQIATIMCKIPVVLTYDPTKAILPKFQFLASKGASPSDIVLMTTRSPNFLLRSLNHIVSFYELVRRFSPSDLKAIAYLTGCPSSIADVRVAQNVKMLLDEGLTNANIHHLLRTRPSVLSSADLKKTVEEVKQLGFDPSQSYFSVVLLTKRAVTKSRWDAKVHVLKKWGWSEQDFSEAYRRHPQFMLRSEDKLNAVMSFWISNLGWDSSAFRIRPVLFGYSLEKRLIPRAKVIKYLLSNGLMKKNASIITPFSLTEKLFLEKCITCFEEKDRFCFRFAACHLHLHVDE* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2382 386 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 28 369 - -
Ahy1g2382 386 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Ahy1g2382 386 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Ahy1g2382 386 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Ahy1g2382 386 SMART mt_12 207 235 IPR003690 GO:0003690|GO:0006355
Ahy1g2382 386 Pfam mTERF 89 235 IPR003690 GO:0003690|GO:0006355
Ahy1g2382 386 Pfam mTERF 256 357 IPR003690 GO:0003690|GO:0006355
Ahy1g2382 386 Gene3D Transcription termination factor 3, mitochondrial 166 372 IPR038538 -
Ahy1g2382 386 PANTHER CGI-12 PROTEIN-RELATED 28 369 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2382 Ahy-Chr1 101897266 101901529 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ahy1g2382 mTERF 2.20E-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2382 K15032 - gmx:102666739 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2542 11 141295574 141296719 Ahy1g2382 1 101897266 101901529 hybridization
Ahy1g2382 1 101897266 101901529 Ahy14g1080 14 19272079 19273098 PCT
Ahy1g2382 1 101897266 101901529 Ahy4g0983 4 19394071 19398776 PCT
Ahy14g1080 14 19272079 19273098 Ahy1g2382 1 101897266 101901529 PCT
Ahy4g0983 4 19394071 19398776 Ahy1g2382 1 101897266 101901529 PCT