Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2342 ATGGAGAATGGCAATGCCAATAAGAGTAGCTATGACGACATAAACGGCAAGATAATGCTGATATCGATCGTCATTGTCTCCGTCGTTCTCACCATAATGATATGCTTCCACATCTACGCCCGCTTGTACCTCCGACACTCTCGCCAACTCCGCCGCAATAATCATAGCATCCGCCGCAACGCGCACCACCACCCTCACTTCGTATTCTACGTGAACCCCGCCGTCATGTTGGCCTCCCGCGGCCTCGATGCCTCCGTGATTGCCTCCCTTCCCGTCTTCACCTTCTCCCGCAAGACCCATCCTCACACCGTCGACTGCCCCGTTTGCCTCTCGGAGTTCGAGGAAGGGGAAACGGGTCGGGTCTTGCCCACGTGCAACCACACCTTCCATACTGAATGCATCGATATGTGGTTCCACTCCCACTCCACCTGCCCACTTTGCAGGGCACCCGTGGAGACTCCGAAACGACCCGATTTGGTTATAACTGTGGGCCATTCTGAACCAGGTTCGAGTTTTCAAGGTGATGGACTGAACCAAACTGGACCCGTGGTTTCTCCTAGTTTGGTCCCAAAGGATTCTTCGTCGATTGTGAATGTGAGCGTTGAGGTGCCCGCAAGAAACGAAGATTATGGTTGCCAGTCGCCGTCGTCTTCGTCGTCGTTTCGGTCACCGGTGGGTCGCATGCTGTCGTTGAAGAGGATTCTGAGCAGAGACCAGAAAGCGAGCGCAGTTGGGTGCAGCTCGACGGCAGAGGAAGGTGGACGATCGGAAACTCAGTAA 780 0.5474 MENGNANKSSYDDINGKIMLISIVIVSVVLTIMICFHIYARLYLRHSRQLRRNNHSIRRNAHHHPHFVFYVNPAVMLASRGLDASVIASLPVFTFSRKTHPHTVDCPVCLSEFEEGETGRVLPTCNHTFHTECIDMWFHSHSTCPLCRAPVETPKRPDLVITVGHSEPGSSFQGDGLNQTGPVVSPSLVPKDSSSIVNVSVEVPARNEDYGCQSPSSSSSFRSPVGRMLSLKRILSRDQKASAVGCSSTAEEGGRSETQ* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2342 259 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 159 - -
Ahy1g2342 259 MobiDBLite consensus disorder prediction 236 259 - -
Ahy1g2342 259 CDD RING-H2_EL5_like 105 148 - -
Ahy1g2342 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 154 IPR013083 -
Ahy1g2342 259 PANTHER RING-H2 FINGER PROTEIN ATL64 8 159 - -
Ahy1g2342 259 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Ahy1g2342 259 SMART ring_2 106 147 IPR001841 -
Ahy1g2342 259 MobiDBLite consensus disorder prediction 241 259 - -
Ahy1g2342 259 SUPERFAMILY RING/U-box 86 154 - -
Ahy1g2342 259 Pfam Ring finger domain 105 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2342 Ahy-Chr1 101415703 101416806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2342 2 243 Rapid Response to Elicitors AT3G16720 43.396 2.64e-55 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2342 - - aip:107638764 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2585 11 142023409 142024583 Ahy1g2342 1 101415703 101416806 hybridization
Ahy1g2342 1 101415703 101416806 Ahy14g1029 14 17835009 17836338 PCT
Ahy1g2342 1 101415703 101416806 Ahy4g0933 4 17378060 17379329 PCT
Ahy14g1029 14 17835009 17836338 Ahy1g2342 1 101415703 101416806 PCT
Ahy4g0933 4 17378060 17379329 Ahy1g2342 1 101415703 101416806 PCT