Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2318 ATGAATCTCAGCAACGGAAGGGGATCCATGTCGACGGTTACTTCAGGTGCTGCTGTGAAATCCGCCGACGCCGTCTCCGACCAGTTTCCGGCGGGTCTGCGGGTCCTTGTTGTGGACGATGATCCCACGTGTCTCATGATTCTCGAGAAGATGCTCCGAACTTGTCTTTACGAAGTTACCAAATGCAATACAGCAGAGAAAGCACTCACACTTCTGCGAAAGAATAAAAATGGGTTTGACATTGTTATCAGTGATGTGCATATGCCAGACATGGATGGATTTAAACTGTTAGAACACATTGGCTTGGAAATGGACCTCCCTGTTATCATGATGTCTGCAGATGATGGTAAAAACGTTGTTATGAAGGGTGTAACACACGGTGCCTGCGATTACTTAATTAAACCGGTTCGCATAGAGGCTTTGAAGAACATATGGCAGCATGTTGTTCGCAAGAGAAAGAATGAATGGAGAGATACTGAGCAGTCGGGTAGTGCCGAAGAAGGAGACCGACAGCAGAAGGCATCGGATGACGCGGATTACTCGTCGTCGGCAAATGAAAGCAACTGGAGAAACTCGAAGAAGAGGAGGGATGAGGAAGAGGAAGCAGAGGAAAGAGATGACACTTCAACTTTAAAGAAGCCAAGAGTTGTTTGGTCTGTTGAGCTGCATCAACAGTTTGTAGCTGCTGTAGATCAACTGGGAATTGATAAGGCTGTACCCAAAAAGATTCTTGAATTGATGAATGTTCCTGGACTCACCAGAGAAAATGTAGCCAGCCACCTTCAGAAATATCGTTTGTACCTCCGAAGGTTGAGTGGGGTTTCTCAGCATCAGAATAACATGAACAGTTCCTTCATGAATCCTCAAGATGCAACATTTGGGACAATTTCTTCGATTAACGGAATTGATCTTCAAACTCTTGCAGCTGCTGGCCAACTTCCAGCACAAAGTCTAGCCACACTTCAAGCAGCCGGACTTGGTAGGTCAGCTCCGAAGGGGGGCTTACCCATGCCCATCATGGATCAAAGAAACCTTTTTAGTTTTGAAAATCCAAGGTTAAGATTCACTGAAGGGCAACAGCAACAACAACAACAACAACATTTGAGTAATAGTAAACCAGTGAACTTACTTCACGGAATCCCAACAAATATGGAACCAAAGCAGCTTGCCAGTTTGCACCAATCATCCCAACCCCTTGGCAACATGACCGTCCGAGTCAATGCTTCTACACAGAGCAATCCCTTGTTAATGCAGATGGCACAATCCCAACCCAGAGGACACATGCTAAGTGAAAATACTGGTCCTCACCTTCCCAGACTCCCATCATGTTTGGCGCAGCCTAGTGCATCAAATGGAACTTCTAATGCTCTTATGGGCAGGAATGGGATTGCGGGTAGTACTAGAGCACCTGGCTACAATCCTATTTCACAAAGCTCTTCAATGATGAATTTTCCCATCAATCAAACCACTGAAATGCCCATCAGCAGTTTCCCTCTTGGAAGCACTCCTGGTATATCCAGTATCACAACAAAAGGCTCGTTTCAAGAAGAAGTTACTTCTGGAATTAAACGGGCAGGCGGGTTTGTTCCAAATTATGACATTTTTAGTGAACTGCAAAAGCCACATGATTGGGAGGTATCGAATCCAAGCCTTACGTATAATGCTGCCTCTCAGCATGCAAATCCTTTACATGGTAACATTGATGTCTCGCCTTCAGTTTTAGTGCAGCAGAGCTTTTCTTCTAACCAACAGACGGGACAAAGCAGAGATGCCAATACCATGATTGTAAAGCCTATATTCTCTGCGAGTGAAAGCATGGAGCAAGGCACTCTCCAAAATCAACACCTCAATACACTCGTCACTGACAACTCAATAAGGGTTAAGACCGAAAGAATCCCTGATGCAAGCTCCCAAACTAACTTCTATCCTGAGCATTATGGGCAGGAGGATCTCATGAGTGCACTTCTCAAACAGAAATCACATCTGTTTGGTTCTGGCAGCAAGAAGGCATTGGACCAGCTGAGAATGATTTTGACTTCGACGGGTATTCCCTGGATAACGTTCCGGTCTAGAACAGACCTTGTATAG 2088 0.4516 MNLSNGRGSMSTVTSGAAVKSADAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNTAEKALTLLRKNKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWRDTEQSGSAEEGDRQQKASDDADYSSSANESNWRNSKKRRDEEEEAEERDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNMNSSFMNPQDATFGTISSINGIDLQTLAAAGQLPAQSLATLQAAGLGRSAPKGGLPMPIMDQRNLFSFENPRLRFTEGQQQQQQQQHLSNSKPVNLLHGIPTNMEPKQLASLHQSSQPLGNMTVRVNASTQSNPLLMQMAQSQPRGHMLSENTGPHLPRLPSCLAQPSASNGTSNALMGRNGIAGSTRAPGYNPISQSSSMMNFPINQTTEMPISSFPLGSTPGISSITTKGSFQEEVTSGIKRAGGFVPNYDIFSELQKPHDWEVSNPSLTYNAASQHANPLHGNIDVSPSVLVQQSFSSNQQTGQSRDANTMIVKPIFSASESMEQGTLQNQHLNTLVTDNSIRVKTERIPDASSQTNFYPEHYGQEDLMSALLKQKSHLFGSGSKKALDQLRMILTSTGIPWITFRSRTDLV* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2318 695 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Ahy1g2318 695 CDD REC_typeB_ARR-like 35 149 - -
Ahy1g2318 695 MobiDBLite consensus disorder prediction 189 210 - -
Ahy1g2318 695 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 654 IPR045279 GO:0009736
Ahy1g2318 695 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Ahy1g2318 695 PIRSF RR_ARR_type-B 10 671 IPR017053 GO:0003677|GO:0003700|GO:0009736
Ahy1g2318 695 MobiDBLite consensus disorder prediction 155 210 - -
Ahy1g2318 695 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Ahy1g2318 695 MobiDBLite consensus disorder prediction 155 176 - -
Ahy1g2318 695 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Ahy1g2318 695 SUPERFAMILY CheY-like 32 156 IPR011006 -
Ahy1g2318 695 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Ahy1g2318 695 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 654 - -
Ahy1g2318 695 Gene3D - 33 171 - -
Ahy1g2318 695 Gene3D - 210 272 - -
Ahy1g2318 695 SMART REC_2 33 145 IPR001789 GO:0000160
Ahy1g2318 695 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2318 Ahy-Chr1 101177585 101182116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2318 68 659 Response Regulator Gene Family AT3G16857 50.872 1.04e-179 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ahy1g2318 Response_reg 4.10E-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2318 - K14491 gmx:100814930 1060.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2613 11 142355714 142359946 Ahy1g2318 1 101177585 101182116 hybridization
Ahy1g2318 1 101177585 101182116 Ahy14g0973 14 16206736 16211226 PCT
Ahy1g2318 1 101177585 101182116 Ahy4g0889 4 15090944 15095416 PCT
Ahy14g0973 14 16206736 16211226 Ahy1g2318 1 101177585 101182116 PCT
Ahy4g0889 4 15090944 15095416 Ahy1g2318 1 101177585 101182116 PCT