Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2308 ATGGGAAGAGCTCCATGCTGTGAGAAAGTGGGGTTGAAGAGAGGAAGATGGACAGCTGAAGAAGATAGGATATTGACTCAATACATAGAAGAACATGGGGAGGGTTCATGGAGGTCGTTGCCCAAGAATGCTGGACTCTTAAGGTGTGGTAAGAGTTGCAGACTCAGATGGATAAACTACCTCAGATCAGATGTCAAGAGAGGCAACATCACTCCCCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAATAGGTGGTCAGTGATAGCAGGGCATTTACCAGGAAGAACAGACAACGAGATAAAGAACTATTGGAACTCTCATCTCAGGAGGAAAATTTATTGCTTCATGAAATCTTTGAATGATTATTCCTCCTTCCCTCCCACCATTGACATTGCTGCATTAAAAGCTTCCAAGAGAAGAGCACCTACTCGATCTACTGCACCTAATAAGAACTTAGAATTAAGGGACACAAAAGAGGTGATAATGCTTCAACAACCAACCATTCAAAAGAATAATGCTGATCATGCTGATCATGAAGCTTTTAATGATGAGGAGTTGGGAGCATATGAATGGTTAGATGATGAAATAATGAAACTTAGTTACATGTTTGAGGGTGGTATGCTTGTAAACTATGGTGATAATAATAATGAAAATGATGAAGAGGAGAACAAGAGTGTTAGTGATTGGAACACTACTAGTGCTACTACACCTCCAGCTCCAAGTTCTTCTTCTTCTTCTTCTGTGAGTTCTGTGTATGATTGGCATCATCATCATGATATCCATTTGGCAAGAGGCAGTGCTCAATCCTATAATAATAATCAATGGGACCTTTTTGAACAAGATCAGATCCCTACTACCTTATGGGGTAGGTAA 885 0.4045 MGRAPCCEKVGLKRGRWTAEEDRILTQYIEEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNDYSSFPPTIDIAALKASKRRAPTRSTAPNKNLELRDTKEVIMLQQPTIQKNNADHADHEAFNDEELGAYEWLDDEIMKLSYMFEGGMLVNYGDNNNENDEEENKSVSDWNTTSATTPPAPSSSSSSSVSSVYDWHHHHDIHLARGSAQSYNNNQWDLFEQDQIPTTLWGR* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2308 294 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 266 - -
Ahy1g2308 294 PANTHER MYB TRANSCRIPTION FACTOR 2 266 - -
Ahy1g2308 294 CDD SANT 16 61 IPR001005 -
Ahy1g2308 294 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ahy1g2308 294 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ahy1g2308 294 MobiDBLite consensus disorder prediction 231 252 - -
Ahy1g2308 294 Gene3D - 71 116 - -
Ahy1g2308 294 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ahy1g2308 294 Gene3D - 14 66 - -
Ahy1g2308 294 CDD SANT 71 112 IPR001005 -
Ahy1g2308 294 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ahy1g2308 294 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ahy1g2308 294 MobiDBLite consensus disorder prediction 216 252 - -
Ahy1g2308 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ahy1g2308 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ahy1g2308 294 SMART sant 66 114 IPR001005 -
Ahy1g2308 294 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2308 Ahy-Chr1 101098423 101099996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2308 1 203 MYB Transcription Factor Family AT5G49330 55.505 1.73e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy1g2308 Myb_DNA-binding 5.10E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2308 K09422 - gmx:100805532 327.02