Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2281 ATGGAAGTTATGTCTTTTTGTGTTACATTCACCAAATTTCATACATTTGCCTTTCTGAAACCAAAAGTAGCAACAACCCAAATTCAGGACCTTTCACTACCCAATAATAGGAGCAAACATTCCAATCCTTATTCATCTTCTTCTTCATCTTCAAGAAGTATAGCAGCAACAGCAACACTATACCCTTCCACCACACAGAAGAACCGCCACTGGATGGTACTCATGGAGCCTCCAACTCACGGTGTCACTTCCAAGTCACAACTCATCGATTATTACGCTAGCACTCTCCACAAAGTCCTTGCCAGTGAGAGAGATGCTCAAATGTGTATATATGATGTTTCCTGCGATACACACTTTGGTTTCTGTTGTGACATTGATCCACAAATAACCTCCCAACTCACAAGTTTACCGGGGGTCTTGTTGGTTAGGCCGGATCCGGATTTCAGTTCTTCGGAAAAGGACTATAGTCTATCAAGTGGTCACGAAGGTCTGCTATCGAATTCAAAGCATTGGCTTGTTAGAATTGATAAACCTGCTGTTGGGATTGTTACAAAGGCTCAGATTGTCGATTATTTTGTTCAAATATTGACCAAGGTCATGGGAAACGAGAAGGATGCTCAGATGTGCATATATCATGTTTCTTGGAAAAAAATATTTGGTTTTTGCTGTGAACTTGATGACGACTGTGCACAGGAGTTAGCTGGTGTGCCTGGTATCTTATCAGTTCAACCAGATAATAATTTTGAGTCAGAAAATAAGGATTATGAAGGTAATAACTTAGAAAACAGTTTGAGTCAGGCAGCTCCCCTGCGAACGAAAAAGCTTTTTGTGACAGGACTATCGTTTTATACATCTGAGAAAACCTTACGCGCAGCATTTGAAGACTTTGGTGATCTTGTTGAAGTCAAAATTATTATGGATAAAATTTCCAAAAGGTCCAAGGGTTATGCATTTGTTGAGTACACCACAGAGGAGGCTGCAAGCGCAGCATTGAAAGAGATGAATGGCAAGATTATTAATGGATGGATGATAGTAGTGGATGTTGCCAAGACTAACCCACCAAGGCACAACAGGGATCATGTCAGGCCATCAGTTTCACAAGCCAAAAGCCTTTTAAGGTATTAA 1125 0.4062 MEVMSFCVTFTKFHTFAFLKPKVATTQIQDLSLPNNRSKHSNPYSSSSSSSRSIAATATLYPSTTQKNRHWMVLMEPPTHGVTSKSQLIDYYASTLHKVLASERDAQMCIYDVSCDTHFGFCCDIDPQITSQLTSLPGVLLVRPDPDFSSSEKDYSLSSGHEGLLSNSKHWLVRIDKPAVGIVTKAQIVDYFVQILTKVMGNEKDAQMCIYHVSWKKIFGFCCELDDDCAQELAGVPGILSVQPDNNFESENKDYEGNNLENSLSQAAPLRTKKLFVTGLSFYTSEKTLRAAFEDFGDLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKTNPPRHNRDHVRPSVSQAKSLLRY* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2281 374 MobiDBLite consensus disorder prediction 354 374 - -
Ahy1g2281 374 SUPERFAMILY RNA-binding domain, RBD 265 360 IPR035979 GO:0003676
Ahy1g2281 374 Gene3D - 246 369 IPR012677 -
Ahy1g2281 374 SMART rrm1_1 274 347 IPR000504 GO:0003723
Ahy1g2281 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 341 IPR000504 GO:0003723
Ahy1g2281 374 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 40 149 IPR037045 -
Ahy1g2281 374 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 158 245 IPR037045 -
Ahy1g2281 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 351 IPR000504 GO:0003723
Ahy1g2281 374 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 42 159 IPR039206 GO:0016554
Ahy1g2281 374 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 166 363 IPR039206 GO:0016554
Ahy1g2281 374 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 42 159 - -
Ahy1g2281 374 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 166 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2281 Ahy-Chr1 100769228 100771126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2281 273 360 C2H2 Transcription Factor Family AT2G19380 31.818 1.04e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2281 - - gmx:100791652 495.352