Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2270 ATGGCCTCAACAACGGTGGTGTCAAACCCAGCACCAACAAGCACGGACCGGTCACGTGACTCAAAGAGGAAGAAGAAGAAGAAACTGCAGAAAGAATATCTTCAGAGTCACTTCAAATGGAAATCGCAAGCGCAGCAACAAATTTATTCCTCCAAGCTCCACCAGGCCTTAGCGAGAGTCAACCTCGCCTCCACCTCCGTCCCCCGCCGCGGAAAGGCCGTCCGAGAAGCCGCGGACAGAGTCCTCGCCACCACAGCTAAAGGCAAAACACGGTGGAGCCGCGCCATACTCGCCAACCGCAGGCTCAAGCTCAAGTTCTCCAAACAGCACAAGAGACAGAGAGTGGCGCAGCCTGCGCTCACCCGATCCAAGAAGCCACGTGTCAGCGTTTTACGCCTCAAAGGGAAGAAGAACTTACCGGCTGTGCAGAGGAAACTCAGGTTCTTGGCGCGACTCGTTCCCGGTTGCCGGAAAGAACCTGTGCCGGTCATTCTCGAAGAGGCCATCGATTACATACCGGCGCTTGAGATGCAAGTCAGAGCCATGGCTGCTCTTCTCAACCTTCTCTCCGGCTCCGGCTCCGGCGCCGCCGCCTCAGACTCCTCTTCCGGCGCCGGCACAAGCTCGGCGCCGCCAAGCTGA 642 0.5794 MASTTVVSNPAPTSTDRSRDSKRKKKKKLQKEYLQSHFKWKSQAQQQIYSSKLHQALARVNLASTSVPRRGKAVREAADRVLATTAKGKTRWSRAILANRRLKLKFSKQHKRQRVAQPALTRSKKPRVSVLRLKGKKNLPAVQRKLRFLARLVPGCRKEPVPVILEEAIDYIPALEMQVRAMAALLNLLSGSGSGAAASDSSSGAGTSSAPPS* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2270 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Ahy1g2270 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 190 IPR036638 GO:0046983
Ahy1g2270 213 CDD bHLH_AtIBH1_like 136 186 IPR044549 GO:0006355
Ahy1g2270 213 MobiDBLite consensus disorder prediction 1 15 - -
Ahy1g2270 213 MobiDBLite consensus disorder prediction 1 32 - -
Ahy1g2270 213 MobiDBLite consensus disorder prediction 192 213 - -
Ahy1g2270 213 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 9 204 IPR044660 GO:0006355
Ahy1g2270 213 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 9 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2270 Ahy-Chr1 100613109 100614169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2270 37 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 58.857 1.72e-50 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2270 - - gmx:100803765 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2668 11 142944599 142945673 Ahy1g2270 1 100613109 100614169 hybridization
Ahy1g2270 1 100613109 100614169 Ahy14g0905 14 14589318 14590449 PCT
Ahy1g2270 1 100613109 100614169 Ahy4g0820 4 12860579 12861694 PCT
Ahy14g0905 14 14589318 14590449 Ahy1g2270 1 100613109 100614169 PCT
Ahy4g0820 4 12860579 12861694 Ahy1g2270 1 100613109 100614169 PCT