Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy1g2261 | ATGACATACCACAACTCTCGTCGGAGCCCCGCGCACTTCCGCTCTGGAGGCCGCGGCTTCCACAGCTCGCCACGTCGCTCTCCCGCTGGGCCTGGAGGTTTCCACCCAATCGGCCCCGGCGAAGGGTTCGGGCCGATGGGTGGTGACGGTTACGGAGAATACGGGTTCAACACTTACCAGGCTCCTCCTCCGCAGCTGTCTGGTCACAAGCGAGGGTTTCGTGGAGTTTCGCCAGATCGTTTTGATGGTGGAAACTTTGCCAAACTATTTGTTGGATCTGTGCCCCGAACAGCCACTGAAGAAGATATTCGACCTTTGTTTGAGGAACATGGGAATGTGATTGAGGTCGCGCTGATCAAGGATAAAAAAACTGGGCAGCATCAAGATTTTTGTTGTGCAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTACACAATCAGCATACCCTTCCTGGAGGTGTTGGTCCTATCCAAGTACGCTATGCTGACGGGGAGCGGGAACGGCTTGGTGCAGTTGAGTACAAATTATTTGTGGGATCTCTGAACAAACAAGCTACAGTGAAGGAAGTTGAGGAAGTTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTCATGCGTGATGAGAAAAAGCAAAGCCGTGGATGTGGTTTTGTTAAATATTCGCATAGGGATATGGCATTGGCAGCTATAAATGCACTGAATGGGATTTATACAATGAGAGGTTGTGATCAACCTCTAATTGTGCGGTTTGCTGATCCCAAGAGACCTCGTCAAGGAGATTCTAGGGGTCCTGCACTTGGTGGCCCAGGATATGGTTCTAGATTTGATGCACCAGGCCCAAGATTTCCATCAAATATTACTGATCCCATGGGTGATCGTATGCCTCCTCCTAATGCTTGGCGTCCAATGCATGCACCAAATATGGGCCCATCTCCGAATGCTGGTTTTCGTGCGGTGGGGCCTCCAATGCTTCCAAGGTCTGGTGACATGGCATTGCCTACAAATCCAGGTGGTCCTATGACTGGCATGGGAGGTCCAATAGATGACCGTTTCCAAGTGCAAAATTTTCCACCATTTTCACAACAGAATTTCAACCAGCCTATGCCACAAATTCCACCAGCCAGCCAGCAACAACAAATAGCACCATTGCACAAACCGACACAATCTTCTCAGGAGTTGCCTCCTTCCCACCAGTTGTACCCTCAAGGTCCGACACCCTACTTACAAACTCCACCACCTTCATCTGTACGGCATCCTGGCCAGCCACAACTTCCACTCACTGCTGGTTCTCTACCTTCACAGCAGATTCATAGCATGAGTGGGCAGTTCCCAACTTCACAACCCCAAGCTCAGCAGAGTTCTTTGGCTACTGCATTTCCTCAGGCACCTCTTGATACTAGCGGAAAATCTGGTACAACTTTGGCTACCTCAAATAAACAGCAAGTTCCCACTGGGCAGCAGCAGACAGTTCAACCTCTTCAGCAATCCCCCTCTCAGTTAGCTCAGATGCTGTCACAGCAAACTCAGACTTTACAAGCAAGCTTTCATTCCTCCCAGCAGGCCTTCTCCCAGCTCCAACAACAACTACAGATGATACAGCCATCTAGTCAGGCTAATACATTGCAGCAAAATTCAGAAGCTACTAAAAATCAGTCTCAATGGGCTGGAACCATACCGCAGACCATGGTCAGCACTGCTGCAGAAATGCCTTCCTCTGCATCTGCTTCTGCTTCTGCTGCTGTACCAGTGGTAAGCCCAAACACAGCTATTGTGAAATGTAATTGGACAGAGCATTTATCTCCAGAGGGTTTCAAGTATTACTACAATAGTGTCACTGGTGAAAGTAGGTGGGAGAAACCAGAGGAGTTGACATTATATGAACAGCAAAAGCAACAGCAAATGATGTCTATGCAGCAGTCTCAGTCTCAGTCACAGTCACAGCCTTCAGTAGTATCTGCTCAGCAACTTCCTCAAGTCCAACAGGTTCAGCCTCAAGGTAATCAAGGCCGGGTTCTCCACCATCAACAAATGCAGCAGCCCCCGGTGTTCCAGGCATACGGAGTTACAGGTCACCAAGGTATTCAGGATTATAAACAGATACAGGCATCTGGAATTTCTGCTGTTGATGCTGGACGCTACTCTCAGGAGTTTGAACTTGGATTTTTTGAGCTTTGA | 2205 | 0.4844 | MTYHNSRRSPAHFRSGGRGFHSSPRRSPAGPGGFHPIGPGEGFGPMGGDGYGEYGFNTYQAPPPQLSGHKRGFRGVSPDRFDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQDFCCAGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEVFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPALGGPGYGSRFDAPGPRFPSNITDPMGDRMPPPNAWRPMHAPNMGPSPNAGFRAVGPPMLPRSGDMALPTNPGGPMTGMGGPIDDRFQVQNFPPFSQQNFNQPMPQIPPASQQQQIAPLHKPTQSSQELPPSHQLYPQGPTPYLQTPPPSSVRHPGQPQLPLTAGSLPSQQIHSMSGQFPTSQPQAQQSSLATAFPQAPLDTSGKSGTTLATSNKQQVPTGQQQTVQPLQQSPSQLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQANTLQQNSEATKNQSQWAGTIPQTMVSTAAEMPSSASASASAAVPVVSPNTAIVKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTLYEQQKQQQMMSMQQSQSQSQSQPSVVSAQQLPQVQQVQPQGNQGRVLHHQQMQQPPVFQAYGVTGHQGIQDYKQIQASGISAVDAGRYSQEFELGFFEL* | 735 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy1g2261 | 734 | MobiDBLite | consensus disorder prediction | 349 | 510 | - | - | |
Ahy1g2261 | 734 | MobiDBLite | consensus disorder prediction | 436 | 510 | - | - | |
Ahy1g2261 | 734 | MobiDBLite | consensus disorder prediction | 262 | 298 | - | - | |
Ahy1g2261 | 734 | SUPERFAMILY | WW domain | 604 | 637 | IPR036020 | GO:0005515 | |
Ahy1g2261 | 734 | MobiDBLite | consensus disorder prediction | 409 | 429 | - | - | |
Ahy1g2261 | 734 | MobiDBLite | consensus disorder prediction | 364 | 408 | - | - | |
Ahy1g2261 | 734 | Gene3D | - | 601 | 646 | - | - | |
Ahy1g2261 | 734 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Ahy1g2261 | 734 | Gene3D | - | 83 | 178 | IPR012677 | - | |
Ahy1g2261 | 734 | CDD | RRM2_FCA | 184 | 263 | IPR034645 | - | |
Ahy1g2261 | 734 | ProSitePatterns | WW/rsp5/WWP domain signature. | 605 | 630 | IPR001202 | GO:0005515 | |
Ahy1g2261 | 734 | SUPERFAMILY | RNA-binding domain, RBD | 62 | 177 | IPR035979 | GO:0003676 | |
Ahy1g2261 | 734 | PANTHER | TRANSFORMER-2-RELATED | 58 | 692 | - | - | |
Ahy1g2261 | 734 | MobiDBLite | consensus disorder prediction | 638 | 666 | - | - | |
Ahy1g2261 | 734 | Gene3D | - | 179 | 271 | IPR012677 | - | |
Ahy1g2261 | 734 | SMART | ww_5 | 600 | 632 | IPR001202 | GO:0005515 | |
Ahy1g2261 | 734 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 183 | 263 | IPR000504 | GO:0003723 | |
Ahy1g2261 | 734 | PANTHER | FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 | 58 | 692 | - | - | |
Ahy1g2261 | 734 | CDD | WW | 602 | 632 | IPR001202 | GO:0005515 | |
Ahy1g2261 | 734 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 185 | 251 | IPR000504 | GO:0003723 | |
Ahy1g2261 | 734 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 89 | 157 | IPR000504 | GO:0003723 | |
Ahy1g2261 | 734 | SUPERFAMILY | RNA-binding domain, RBD | 183 | 284 | IPR035979 | GO:0003676 | |
Ahy1g2261 | 734 | Pfam | WW domain | 603 | 630 | IPR001202 | GO:0005515 | |
Ahy1g2261 | 734 | SMART | rrm1_1 | 184 | 259 | IPR000504 | GO:0003723 | |
Ahy1g2261 | 734 | SMART | rrm1_1 | 88 | 169 | IPR000504 | GO:0003723 | |
Ahy1g2261 | 734 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 87 | 173 | IPR000504 | GO:0003723 | |
Ahy1g2261 | 734 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 599 | 632 | IPR001202 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy1g2261 | Ahy-Chr1 | 100488088 | 100497436 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy1g2261 | 86 | 269 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 25.500 | 8.88e-13 | 69.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy1g2261 | - | - | gmx:100798390 | 912.138 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Ahy11g2675 | 11 | 143088966 | 143098832 | Ahy1g2261 | 1 | 100488088 | 100497436 | hybridization |