Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2222 AGGAGGAAAGCAAGGAAAAAAGAAAGAGAGGGAGAGATCAGATGGGTCGTGACTCGTGAAAAGATTGAGATAAAGCTCATCCAGAACCCAACCAACAGGCAAGTTACATACTCAAAGAAAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTTTGTGATGCTAAGGTCTCGCTCATCATGTTCTCCAAGAACAACAAGATGCATGAATACATCAGCCCTGGCCTTAGCACAAAGAAGATCATTGATCCGTATCAGAAAACTTTGGGAGATATCGATCTCTGGCATTCTCACTATGAGAAAATGCTTGAGAATTTGAAGAAACTCAAAGATACTAATAATAAGCTCAGAAGACAGATCAGGAGTCGGATAGGGGAGGGTAGCTTGGATATGGATGATATGAGCTCTCAGCAACTGCGTACTCTTGAAGAGGATATGGTTTCTGCCATTGCCAAAATACGCCACTGTCAACCCCCCAGCGGCCGCCACTCTTTTCATCCTCACCTTCTCTCTGTGCTCGTCGCGAAGCCCTATCAGCCGCCGCTACTCTTCTCCTCATCACCGTATATATGTGCTCGTCGGGAAGCCCGCCTCTGTGGTCGTTGGCGACGGCAGTGA 624 0.4647 RRKARKKEREGEIRWVVTREKIEIKLIQNPTNRQVTYSKKRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLSTKKIIDPYQKTLGDIDLWHSHYEKMLENLKKLKDTNNKLRRQIRSRIGEGSLDMDDMSSQQLRTLEEDMVSAIAKIRHCQPPSGRHSFHPHLLSVLVAKPYQPPLLFSSSPYICARREARLCGRWRRQ* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2222 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 158 - -
Ahy1g2222 207 Coils Coil 101 128 - -
Ahy1g2222 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 73 IPR002100 GO:0003677|GO:0046983
Ahy1g2222 207 Gene3D - 29 95 IPR036879 GO:0003677|GO:0046983
Ahy1g2222 207 SUPERFAMILY SRF-like 18 112 IPR036879 GO:0003677|GO:0046983
Ahy1g2222 207 CDD MADS_MEF2_like 19 93 IPR033896 GO:0000977|GO:0045944
Ahy1g2222 207 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Ahy1g2222 207 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Ahy1g2222 207 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Ahy1g2222 207 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Ahy1g2222 207 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Ahy1g2222 207 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Ahy1g2222 207 PANTHER APETALA3 18 158 - -
Ahy1g2222 207 Pfam K-box region 98 157 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2222 Ahy-Chr1 99921136 99928942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2222 17 156 MADS-box Gene Family AT3G54340 55.714 2.91e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy1g2222 K-box 1.20E-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2222 K09264 - gmx:100784496 241.891