Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2210 ATGCAACTATTTTCACATAGGGAGATCGGATCCAATGTTCAATTTGAAACCCTCATAGGAGGTTATTTGAGGCCGACCTTACCGAGGGGAAAATATACACTATCTTCAATTTTTCAGTTGCTCAGAATGACCTCAAGTACAAAGCCACCAATCATGTTTAGCAGAATATATTTTAAGAGAGATACCCAGCTTAGGGTGGTTCAGGATCCTCTATTCCCTACACATATTTTTCGCTTTGTGCCCAATGAAGTAATACTTAACCACACCAATGCTCAGTCCCATTTAATTGATGTAATTGGGCTCCTCACTGCTAAGGGTGACATTATTGAATTCACAAAGAATGGAAAGAAGTCCATCTACATTGTCATAGAACTTGATGACCTGAGGGGAAATGGTACCATTCGATGTACTTTGTGGGAAGAATTTGCAACTAAATTGGTAAAGCATATGGAAGAAACACCAACCTCAGAATATATACTTATTATACAATTTGCGAAGTTTAACCTATTCAAAGGTACAATGGGTATATCAAACACCAACTACAATTCCATTCTGCACATCAACGGTGATTTTCAAGAGGTCAAGGATTTTCGCAAGAGTGTCATAATATCAGGTGTACCTGCTGCAACTCAAGTTTCTCAAATACCGGGAGAGCCGACATATTCACTCGAAGAGGACCTACTTAACCATTCCATTTATAAGCCCATCTCCGAGCTAAAGGATTCAATTGAGAATGGGCTCTTTGTCACTATTGGCACGGTTATATCCATTGATCCTAAGAATGGGTGGTGGTACAAGAGTTGCAAGCATTGCTTCCATTCTTTACAAGAAGCCGAGAACTCATACCACTGTGCTAGGTGTGAGACATACCCATCGTCTCACACTCCAAGGTTTAGCATAAACATGCGAGTTGCTGATGAGACCGATACGGCTTCTTTCCTACTGTACGATAAGGAGGTGTCCAAATTCCTTGGTATATCCGCATCCGATCTCAGACTCGCACAACTAACCAGGGGTGGAGTTAACAAGGAATATCCAACAGAGCTTAACTCACTGATGGGAAAGAAATTTCTGTTCAAAGTATCTGTGAAAATGGAAGATCTTAATGCATTCCAACCATGTAGGATAATTGTTACTAAGCTCTGTGCGGACAACTCCGTTATCACAAAATTTACTGCGAAGACTAGCTTTGACGAGCACAATATGGGTATGGAGAACTCTGAACTGCTGAGCATGAACACTGACTCTGCTGAGACCCCAAAGGGTACAACCTCTCCCTCTGTTGAGACTTTATCCCAGGGAACAAATGATGGATTCTCAACTCCAAATGATAAAATTATCACTGGTGGGTGGTCTAAGAAGCTGATCGACGTGTACCCCGATTCTGCCCGTGCATCATCATCATCCAAATGCAGGAAAGTGACAGAGGGTGCCACTGCAACCATTGTCGAGATTCATGATGAGTAG 1467 0.4185 MQLFSHREIGSNVQFETLIGGYLRPTLPRGKYTLSSIFQLLRMTSSTKPPIMFSRIYFKRDTQLRVVQDPLFPTHIFRFVPNEVILNHTNAQSHLIDVIGLLTAKGDIIEFTKNGKKSIYIVIELDDLRGNGTIRCTLWEEFATKLVKHMEETPTSEYILIIQFAKFNLFKGTMGISNTNYNSILHINGDFQEVKDFRKSVIISGVPAATQVSQIPGEPTYSLEEDLLNHSIYKPISELKDSIENGLFVTIGTVISIDPKNGWWYKSCKHCFHSLQEAENSYHCARCETYPSSHTPRFSINMRVADETDTASFLLYDKEVSKFLGISASDLRLAQLTRGGVNKEYPTELNSLMGKKFLFKVSVKMEDLNAFQPCRIIVTKLCADNSVITKFTAKTSFDEHNMGMENSELLSMNTDSAETPKGTTSPSVETLSQGTNDGFSTPNDKIITGGWSKKLIDVYPDSARASSSSKCRKVTEGATATIVEIHDE* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2210 488 PANTHER BNAC01G35430D PROTEIN 248 389 - -
Ahy1g2210 488 SUPERFAMILY Nucleic acid-binding proteins 92 201 IPR012340 -
Ahy1g2210 488 PANTHER REPLICATION FACTOR A 1, RFA1 248 389 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy1g2210 488 Pfam Replication factor-A C terminal domain 249 380 IPR013955 -
Ahy1g2210 488 SUPERFAMILY Nucleic acid-binding proteins 235 382 IPR012340 -
Ahy1g2210 488 MobiDBLite consensus disorder prediction 414 443 - -
Ahy1g2210 488 CDD RPA1_DBD_C 236 369 IPR013955 -
Ahy1g2210 488 Gene3D - 72 205 IPR012340 -
Ahy1g2210 488 CDD RPA1_DBD_B_like 97 202 - -
Ahy1g2210 488 Gene3D - 228 389 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2210 Ahy-Chr1 99757673 99762165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2210 73 378 Core DNA Replication Machinery Family AT5G08020 24.224 2.24e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2210 - - ahf:112707100 633.639