Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2208 ATGACGATTGTTCGCTGGAGAATACAGACTTCTGATTATCCACAACTCCAATTCGAAAGGCCAGAAGAATCAAAAGACCCTGTGGTTCAGTTTCTGGAAGGAGAACTTCTCATAGTGTGTTTGTATTCCAATCCAGGTGGACGCTTTGCCTCAAGGGAAAAAATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGTGGGCATGTTGCAGCGAAATTCCAATATGACCAGGTTATGGATGTTCCCGCTTTCTTCCTTGTCCGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGTTGGAGGCGGTAAAAGCCAAAATCAAATCTGCTAAATCAAAAGATGAGTCTGAGTCTCTTAAATTTACTCAAAAGAAACTGATTAACAAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGGGTTGCATTTGGATTGATGGAGGTACACCCGCTGCATCAGGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCAGTCTTTCGCCGCTTGGTATAGCATTGACTTAACATTTATTATGCATTGA 765 0.4092 MTIVRWRIQTSDYPQLQFERPEESKDPVVQFLEGELLIVCLYSNPGGRFASREKMSLLKNCRSFLSNFFFIPVGMLQRNSNMTRLWMFPLSSLSEAEKVLGEISNYKVQLEAVKAKIKSAKSKDESESLKFTQKKLINKAGCKFLIFAHHQPMIDAIHECLLKKKVGCIWIDGGTPAASGQQLVTDFQEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGQSFAAWYSIDLTFIMH* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2208 254 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 113 240 IPR030101 GO:0006281|GO:0031297|GO:0036310
Ahy1g2208 254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 242 IPR027417 -
Ahy1g2208 254 Coils Coil 96 123 - -
Ahy1g2208 254 Pfam Helicase conserved C-terminal domain 138 238 IPR001650 -
Ahy1g2208 254 Gene3D - 66 243 IPR027417 -
Ahy1g2208 254 SMART helicmild6 155 238 IPR001650 -
Ahy1g2208 254 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 113 240 - -
Ahy1g2208 254 CDD SF2_C_SNF 139 239 - -
Ahy1g2208 254 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 132 254 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2208 Ahy-Chr1 99745116 99770446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2208 142 239 RAD5 or RAD16-like Gene Family AT1G02670 34.694 9.10e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2208 K14440 - ahf:112723272 439.113