Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2202 ATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGCGGGCATGTTGCAGCGAAATTCCAATATGACCAGGTTATGGATGTTTCCGCTTTCTTCCTTATCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGTTGGAGGTGGTAAAAGCCAAAATCAAGTCTGCTAAATCAAAAGATGAGTCTGAATCTGTTAAATTTACTCAAAAGAATCTGATTAACAAGATATATACTAATTCTGCAGATGCCAAGATTCCTGCTGCTCTTGAGTATCTCGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCGCTCCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTACATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCATGCATATAGAATTGGTCTCATCAGTAAATATATACTAGTTGGTAAATGA 651 0.3948 MSLLKNCRSFLSNFFFIPAGMLQRNSNMTRLWMFPLSSLSEAEKVLGEISNYKVQLEVVKAKIKSAKSKDESESVKFTQKNLINKIYTNSADAKIPAALEYLGTVIEAGCKFLIFALHQPMIDAIHECLLKKKVGCIWIDGGTPAASRQQLVTDFQEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDHAYRIGLISKYILVGK* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2202 216 CDD SF2_C_SNF 92 206 - -
Ahy1g2202 216 Coils Coil 49 69 - -
Ahy1g2202 216 Pfam Helicase conserved C-terminal domain 101 206 IPR001650 -
Ahy1g2202 216 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 44 206 - -
Ahy1g2202 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 206 IPR027417 -
Ahy1g2202 216 SMART helicmild6 123 206 IPR001650 -
Ahy1g2202 216 Gene3D - 21 212 IPR027417 -
Ahy1g2202 216 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 44 206 IPR030101 GO:0006281|GO:0031297|GO:0036310
Ahy1g2202 216 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 98 216 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2202 Ahy-Chr1 99683759 99687838 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2202 77 206 RAD5 or RAD16-like Gene Family AT1G05120 30.597 8.90e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2202 K14440 - ahf:112723272 328.946