Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2188 ATGAGCCTTCTAAGTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACATTTTCTTCATTCCAGTGGGCATGTTGCAGCGAAATTCCAATATGACCAGATATATACTAATTCTGCAGATGCCAAGATTCTTGCTGCTCTTGAATATCTCGGAACTTTCATTGAGGCAGGTTGCAAGTTTCATATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCGGTATCAAGGCAGCTGTAGTATGGTGGTATTTTTGCTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCAGGTTCTGTTATTTCTGCAGTCTTTCGCCGCTTGGTATAGCATTGACTTAACATTTATTATGCATTGA 534 0.412 MSLLSSKELPKFSVKHFLHSSGHVAAKFQYDQIYTNSADAKILAALEYLGTFIEAGCKFHIFAHHQPMIDAIHECLLKKKVGCIWIDGGTPAASRQQLVTDFRYQGSCSMVVFLLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGQVLLFLQSFAAWYSIDLTFIMH* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2188 177 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 21 157 - -
Ahy1g2188 177 Pfam Helicase conserved C-terminal domain 43 155 IPR001650 -
Ahy1g2188 177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 156 IPR027417 -
Ahy1g2188 177 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 21 157 IPR030101 GO:0006281|GO:0031297|GO:0036310
Ahy1g2188 177 Gene3D - 5 158 IPR027417 -
Ahy1g2188 177 SMART helicmild6 70 155 IPR001650 -
Ahy1g2188 177 CDD SF2_C_SNF 39 156 - -
Ahy1g2188 177 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 45 177 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2188 Ahy-Chr1 99181431 99184230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2188 11 156 RAD5 or RAD16-like Gene Family AT1G05120 33.784 4.08e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2188 K14440 - adu:107484479 218.394