Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2169 ATGGATAAATGGGATCTTGAACTCGGTCTTGCTCTCCCAAGCAATTCTCCTTGTGCAGGCTCTAATGATGATATGGAGGAGGAAGAGGTTACACATCCCACTCTGTGTCTCCTTCCGTTAACTCCTGGCCACTCATGGAGGAAGAAACGGCATAGGATGTACGTGAAGGTGAAGATGGAAGGTGTAGGGATTGCAAGAAAGGTTGACCTCACCATGCACCATTCATTTCACACCCTTAACCATGCCTTGCTCCACATGTTTGGAAAACCCCCTCATCAATTCTCAAACTCCTATCGCCTCCTTTTTCAGGACCAACAAGGCCATTGGCTTCTCGCCAAAGATGTCCCATGGAGAACTTTCCTTAACTCTGCGCAGCGTCTCAAACTGCTCTGA 393 0.4809 MDKWDLELGLALPSNSPCAGSNDDMEEEEVTHPTLCLLPLTPGHSWRKKRHRMYVKVKMEGVGIARKVDLTMHHSFHTLNHALLHMFGKPPHQFSNSYRLLFQDQQGHWLLAKDVPWRTFLNSAQRLKLL* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2169 130 Gene3D - 47 130 - -
Ahy1g2169 130 ProSiteProfiles PB1 domain profile. 52 130 IPR000270 GO:0005515
Ahy1g2169 130 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 50 130 - -
Ahy1g2169 130 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 50 130 IPR003311 GO:0005634|GO:0006355
Ahy1g2169 130 SUPERFAMILY CAD & PB1 domains 50 128 - -
Ahy1g2169 130 Pfam AUX/IAA family 96 130 IPR033389 -
Ahy1g2169 130 Pfam AUX/IAA family 49 89 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2169 Ahy-Chr1 98874802 98875488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2169 8 127 B3 DNA Binding Superfamily AT3G61830 30.645 6.34e-11 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Ahy1g2169 AUX_IAA 1.30E-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2169 K14484 - aip:107640278 259.996