Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2113 ATGCAGTGTTGCGTGGTCTTGTGGAGAATGGGAAGTACTGGTACTGACAAGATGCCAGGCAATAACAGCACAGGAAGTTCAGAAACCACTATTGAGATAAAGATCAAGACCTTGGATTCACAGACTTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACGGATTGCTTCTGTCACTGGAGTGTTATCACATCGGCAGCGCTTAATTTGCCAAGGAAAGGTTCTGAAGGACGATCAACTCCTGTCTGCTTACCATGTTGAAGATGGTCATACCTTGCATCTGGTTTCTAGGCAACCTGATCTACCAGGATTTTTGCCCGGTCATTCAGGGGCTGACCCAAATTCAAGCACAAGTCATGGCCACAGTAGTCAAATATCCCCGGGTGTAGTCATTGAAACTTTCAATGTACCTGTTCAGGGAGATGGAGTTACTCCTGAATTCAGTAGGATTGTTTCTGCTGTACTAGGCTCTATTGGAATTCCAAACTTCGGAAGTGGTGTTGAAGGGATTGATGTCAGGGAGCATGACTCCCAAGGCTTTGGAAGAACTTCAGGTTCCAGTGGTCTTTCAGATTCATCCCATCCTCAGCCTGAACAAACTGGTTTGCGGTATTCATCAGATAGGTCGCGTAATACCTTTGTACATCCAGCAGCAGCTTCTTTGGGATCTTTGCAGCCTCCTGTTATTCCCGATTCTTTGACAACACTATCCCAATTTCTGAGTCATATAAGTCACGAATTTGATGCAATTGTCAGAGAAGGGGGCAATAATGTCCAAGCAGCTGAGGCTCATAGGAATGAAGAAATGGGGTCTGCTTCGTCACGATTGGGTTCAACAGCAGAAGCACTTACATCACCTGCATCCTTGGCAGAAGTCATGCTATCTACCAGACGAATGATGATTGAACAAGCTGGGGAATGCCTACTTCAACTTGCAAGACACCTGGAGAATCAGGCAAATGTAACTGATCATTTGATGCGGTCAAGCATTCAGTCTAGGGCTTTGAGGACTGGAGTTCTGTTCTATAACCTGGGTGCATTATTCCTTGAGCTTGGCCGCACAACCATGACATTGCGCTTGGGTCAAAGTCCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTCATATCTCCGTCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCGAACTTTGGTACTGTCCCCATAGGAACTGCTCAGTCTAACGCAAGTTTAGCCACACCAAATGCCAGTCAAGAAGAACGTGCTGATACACAGTCTGCTTCAGTACAAAGAAATCAAGGTGAAGGTCCTGCTAATCAGGCAGCCTCAAGGCGTTCAGATGTGGCTGGTGCTGGGGAGCAAGGAGTAAGGATTGTGCCAATTAGAACCATGGTTGCAACAGTACCAGGTTCCTTAGGTCGTCCACCTGCAGAACCATCTGGTAATTCTATAGGGGTTTACTATCCGGTTCTCGGGAGATTTCAACAGGTATCTTCAGGGCATGGAAATAGTGAACAAGGATCTCAACCAGCTAGTCAGCATCATGCTGTGCAACAGTCCAGTCATGAAAACACATTGCAAAGGCAAAACGAAGATTCTGCAAGGAATGGATCCTCATCAACTCCTACCACAAGCTCGAATTCCCGTGTGGTGAATATCAATATCCTGGCAGCTGGTGGGGCCCAGAATAATCAGGAGTCTGAGCGACAGTTACCAAACAGTGTTCTTCAGTTTATAAGGACCCTGTTTCCTGGGGGAGAAATTCATGTTGAAGACTTGAATTTACAGGGAACAAATTCAGGTTCTACCCCAGAGCAAGCTGCAACAGCAAGGGCAGCTCAGGCCCCTGAAGCTGAACCTAGAGTTAGTGATGAAGGAAGGTTTTTGTCAAACATACTCCGCGAAATCATTCCCCTCGTGTCTCAACAAACAGGCTCTGGAAGAAATCCTTCAGAGGAACAAGCAGCTCAGGATTCTTCATCACAGGTGGAAACTGATGCAGGGACATCACGAAGGCGGAATGGTTCAGATCCAAGCCCCCCTGATTCTAAACGCCAAAAGATGGAGTGA 2088 0.4679 MQCCVVLWRMGSTGTDKMPGNNSTGSSETTIEIKIKTLDSQTYTLRVDKQMPVPALKERIASVTGVLSHRQRLICQGKVLKDDQLLSAYHVEDGHTLHLVSRQPDLPGFLPGHSGADPNSSTSHGHSSQISPGVVIETFNVPVQGDGVTPEFSRIVSAVLGSIGIPNFGSGVEGIDVREHDSQGFGRTSGSSGLSDSSHPQPEQTGLRYSSDRSRNTFVHPAAASLGSLQPPVIPDSLTTLSQFLSHISHEFDAIVREGGNNVQAAEAHRNEEMGSASSRLGSTAEALTSPASLAEVMLSTRRMMIEQAGECLLQLARHLENQANVTDHLMRSSIQSRALRTGVLFYNLGALFLELGRTTMTLRLGQSPSEAVVNGGPAVFISPSGPNHIMVQPLPFQPGANFGTVPIGTAQSNASLATPNASQEERADTQSASVQRNQGEGPANQAASRRSDVAGAGEQGVRIVPIRTMVATVPGSLGRPPAEPSGNSIGVYYPVLGRFQQVSSGHGNSEQGSQPASQHHAVQQSSHENTLQRQNEDSARNGSSSTPTTSSNSRVVNINILAAGGAQNNQESERQLPNSVLQFIRTLFPGGEIHVEDLNLQGTNSGSTPEQAATARAAQAPEAEPRVSDEGRFLSNILREIIPLVSQQTGSGRNPSEEQAAQDSSSQVETDAGTSRRRNGSDPSPPDSKRQKME* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2113 695 SUPERFAMILY Ubiquitin-like 27 104 IPR029071 -
Ahy1g2113 695 PRINTS Ubiquitin signature 41 61 IPR019956 -
Ahy1g2113 695 PRINTS Ubiquitin signature 62 82 IPR019956 -
Ahy1g2113 695 PRINTS Ubiquitin signature 83 104 IPR019956 -
Ahy1g2113 695 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 10 418 - -
Ahy1g2113 695 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 415 695 - -
Ahy1g2113 695 MobiDBLite consensus disorder prediction 184 214 - -
Ahy1g2113 695 MobiDBLite consensus disorder prediction 416 460 - -
Ahy1g2113 695 MobiDBLite consensus disorder prediction 646 695 - -
Ahy1g2113 695 Gene3D - 24 108 - -
Ahy1g2113 695 MobiDBLite consensus disorder prediction 180 214 - -
Ahy1g2113 695 MobiDBLite consensus disorder prediction 416 446 - -
Ahy1g2113 695 Pfam Ubiquitin family 33 103 IPR000626 GO:0005515
Ahy1g2113 695 CDD Ubl_ubiquitin_like 33 100 - -
Ahy1g2113 695 SMART ubq_7 31 102 IPR000626 GO:0005515
Ahy1g2113 695 MobiDBLite consensus disorder prediction 646 682 - -
Ahy1g2113 695 ProSiteProfiles Ubiquitin domain profile. 31 106 IPR000626 GO:0005515
Ahy1g2113 695 MobiDBLite consensus disorder prediction 503 556 - -
Ahy1g2113 695 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 10 418 - -
Ahy1g2113 695 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 415 695 - -
Ahy1g2113 695 MobiDBLite consensus disorder prediction 115 130 - -
Ahy1g2113 695 MobiDBLite consensus disorder prediction 106 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2113 Ahy-Chr1 98209262 98216826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2113 31 102 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 4.04e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2113 K23390 - gmx:100783070 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2847 11 146067307 146074917 Ahy1g2113 1 98209262 98216826 hybridization