Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g2048 ATGGCTTCCTCTAGTTTCCAAGTGACCTGTTTCTACAAGATTGTTCTCAGACAAAGCCTTGAAGATGGAAATCTTACGATACCAAAAACGTTCAGTATGAAATATGGTGACGGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCTTGGAAGATAGATTGGTCTGAGTATGATGGTGCCATTCTATTTGAAAATGGTTGGAAAGAATTTGCTTCATATTACTCTTTGGATCATGGCCATATGCTGTGGTTTGAGTACAATGAAACTTGTAACATTGAAGTAAACATTTTTGACATGACTTGCCTTGAAATAGACTATCCTTCCTTGGATCACATCAGCGATGACGATTCGATTGAGATCTTGAATGAACTGCCCCCACGAGGCAACTATCCTTCCAAGGATCACATTGATGATGGCAACAAGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCAAAACTAAAGAAGTGAAATGGCGCGCTGAAATACAATATCCTTCCAAGCACCACATCGATGAGGACAACATGGCTAAGCCACGAAGAGGCCGAGGCCGGCCGAGAAAAACAGAGAAAGCAGCACCAAAGACACCATCTGGCAAAACTAGGTGCCCTGAAATAGACTATCCTTCCAAGGACAACATGGTTAAGGTTGAGAATGAACCGCCAAGAAGAGGCCGAGGCCGAGGCCGGCTGAGGAAAAAATTGAAAGCAGCAGCAGAAGTATCATCTCCTTCTACAAGTAAAATATTGAGTAGTTCTGTCAAGAATGAAGAAGCTAGTCAATCTGAATGA 882 0.4388 MASSSFQVTCFYKIVLRQSLEDGNLTIPKTFSMKYGDGVPNPVYLKPPDGTAWKIDWSEYDGAILFENGWKEFASYYSLDHGHMLWFEYNETCNIEVNIFDMTCLEIDYPSLDHISDDDSIEILNELPPRGNYPSKDHIDDGNKVKVENEPPRRGRGRPRKTEKAAPKTPSPCTSKMFTSSAKTKEVKWRAEIQYPSKHHIDEDNMAKPRRGRGRPRKTEKAAPKTPSGKTRCPEIDYPSKDNMVKVENEPPRRGRGRGRLRKKLKAAAEVSSPSTSKILSSSVKNEEASQSE* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g2048 293 SUPERFAMILY DNA-binding pseudobarrel domain 4 102 IPR015300 -
Ahy1g2048 293 MobiDBLite consensus disorder prediction 183 210 - -
Ahy1g2048 293 MobiDBLite consensus disorder prediction 168 182 - -
Ahy1g2048 293 MobiDBLite consensus disorder prediction 133 165 - -
Ahy1g2048 293 SMART B3_2 11 103 IPR003340 GO:0003677
Ahy1g2048 293 Gene3D - 4 104 IPR015300 -
Ahy1g2048 293 CDD B3_DNA 10 101 IPR003340 GO:0003677
Ahy1g2048 293 PRINTS AT-hook-like domain signature 153 163 IPR017956 GO:0003677
Ahy1g2048 293 PRINTS AT-hook-like domain signature 208 219 IPR017956 GO:0003677
Ahy1g2048 293 PRINTS AT-hook-like domain signature 253 263 IPR017956 GO:0003677
Ahy1g2048 293 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Ahy1g2048 293 MobiDBLite consensus disorder prediction 270 293 - -
Ahy1g2048 293 PANTHER B3 DOMAIN-CONTAINING 8 215 - -
Ahy1g2048 293 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 215 - -
Ahy1g2048 293 MobiDBLite consensus disorder prediction 125 293 - -
Ahy1g2048 293 Pfam B3 DNA binding domain 18 101 IPR003340 GO:0003677
Ahy1g2048 293 MobiDBLite consensus disorder prediction 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g2048 Ahy-Chr1 97441611 97443932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g2048 8 123 B3 DNA Binding Superfamily AT4G01580 38.333 6.50e-17 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy1g2048 B3 1.60E-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g2048 - - ahf:112700056 558.91