Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1976 ATGGGCCTTAAGGGGTTGAGGAGCGGCTGGACCGTGCCGCCCAAGCCATGTGACTCCTGCAAGATCGCTTCCGCGGCACTCTTCTGCCGCCCTGATTCCGCCTTCCTCTGCATAGCCTGCGATTCCAAGATTCACTGCGCCAACAAGCTTGCTTCGCGCCACGACCGAGTCTGGATGTGTGAGGTCTGCGAGCAGGCACCTGCTGCGGTCACCTGCAAAGCTGACGCAGCAGCCCTCTGCGTCACCTGCGACTCTGACATCCACTCTGCTAACCCCCTCGCCCGCCGCCACGAGCGCATTCCCGTCGAGCCTTTCTTTGACTCTGCCGACTCCATCGTCAAGGCCTCTGCCGCCTCCTTCAGCTTCGTCGTCCCAACCGACAACGGCATCTCCTCTGACGGATTCCCCAACGACGACGCCGCCTGGCTCATTCCCAACCCAAACTACGGCTCAAAGCTTATGGACGCCCCGGACATGAAATCAAGGGAGATGTTCTTCTCAGAAATGGATCCCTTCCTCGATTTCGATTATTCCAACTCCTTCCAGAACAACAACAACAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCGGTTCAATCCAAACCCGCTCCCATGATGAATCACCATGCCGAAGGTAGCTGCTTCGACATCGATTTTTGTAGATCGAAGCTTTCCTCCTTCAACTATCCATCACAGTCTATTAGCCAAAGCGTTTCTTCGTCTTCGCTTGATGTAGGAGTGGTGCCAGACGGGAACACCGTCTCGGATATATCGTACTCGTTCGGCCGGAACTGCTCCGATTCGAGTGGGATGGGATCGGCGGGAAGTGGCGGCGGAGGTACGCAGCTGTGCGGGATGGACCGTGAGGCGAGGGTGCTGAGGTACAGGGAGAAGAGGAAGAACCGTAAGTTCGAGAAGACCATAAGATACGCTTCGCGTAAGGCTTATGCAGAAACCCGACCCAGGATCAAGGGCCGGTTCGCTAAACGGACCGAAATCGAGTCGGAGGTGGATCGTCTCTACAGCCCCGGCGGTGGTGTCCCAGGGTGTCTCATGCTGGACAACCAATACGGCGTCGTACCATCGTTTTAG 1095 0.5699 MGLKGLRSGWTVPPKPCDSCKIASAALFCRPDSAFLCIACDSKIHCANKLASRHDRVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLARRHERIPVEPFFDSADSIVKASAASFSFVVPTDNGISSDGFPNDDAAWLIPNPNYGSKLMDAPDMKSREMFFSEMDPFLDFDYSNSFQNNNNNNNSAGNDSVVPVQSKPAPMMNHHAEGSCFDIDFCRSKLSSFNYPSQSISQSVSSSSLDVGVVPDGNTVSDISYSFGRNCSDSSGMGSAGSGGGGTQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESEVDRLYSPGGGVPGCLMLDNQYGVVPSF* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1976 364 CDD Bbox1_BBX-like 16 59 - -
Ahy1g1976 364 ProSiteProfiles CCT domain profile. 289 331 IPR010402 GO:0005515
Ahy1g1976 364 SMART bboxneu5 12 59 IPR000315 GO:0008270
Ahy1g1976 364 SMART bboxneu5 60 102 IPR000315 GO:0008270
Ahy1g1976 364 Pfam B-box zinc finger 57 102 IPR000315 GO:0008270
Ahy1g1976 364 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Ahy1g1976 364 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 364 IPR045281 GO:0009909
Ahy1g1976 364 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Ahy1g1976 364 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 4 364 - -
Ahy1g1976 364 Pfam CCT motif 289 331 IPR010402 GO:0005515
Ahy1g1976 364 CDD Bbox1_BBX-like 60 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1976 Ahy-Chr1 96566818 96568639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1976 3 364 C2C2-CO-like Transcription Factor Family AT5G57660 54.255 1.28e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ahy1g1976 zf-B_box 1.00E-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1976 - - gmx:100805693 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3001 11 147638412 147640588 Ahy1g1976 1 96566818 96568639 hybridization