LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy1g1976	ATGGGCCTTAAGGGGTTGAGGAGCGGCTGGACCGTGCCGCCCAAGCCATGTGACTCCTGCAAGATCGCTTCCGCGGCACTCTTCTGCCGCCCTGATTCCGCCTTCCTCTGCATAGCCTGCGATTCCAAGATTCACTGCGCCAACAAGCTTGCTTCGCGCCACGACCGAGTCTGGATGTGTGAGGTCTGCGAGCAGGCACCTGCTGCGGTCACCTGCAAAGCTGACGCAGCAGCCCTCTGCGTCACCTGCGACTCTGACATCCACTCTGCTAACCCCCTCGCCCGCCGCCACGAGCGCATTCCCGTCGAGCCTTTCTTTGACTCTGCCGACTCCATCGTCAAGGCCTCTGCCGCCTCCTTCAGCTTCGTCGTCCCAACCGACAACGGCATCTCCTCTGACGGATTCCCCAACGACGACGCCGCCTGGCTCATTCCCAACCCAAACTACGGCTCAAAGCTTATGGACGCCCCGGACATGAAATCAAGGGAGATGTTCTTCTCAGAAATGGATCCCTTCCTCGATTTCGATTATTCCAACTCCTTCCAGAACAACAACAACAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCGGTTCAATCCAAACCCGCTCCCATGATGAATCACCATGCCGAAGGTAGCTGCTTCGACATCGATTTTTGTAGATCGAAGCTTTCCTCCTTCAACTATCCATCACAGTCTATTAGCCAAAGCGTTTCTTCGTCTTCGCTTGATGTAGGAGTGGTGCCAGACGGGAACACCGTCTCGGATATATCGTACTCGTTCGGCCGGAACTGCTCCGATTCGAGTGGGATGGGATCGGCGGGAAGTGGCGGCGGAGGTACGCAGCTGTGCGGGATGGACCGTGAGGCGAGGGTGCTGAGGTACAGGGAGAAGAGGAAGAACCGTAAGTTCGAGAAGACCATAAGATACGCTTCGCGTAAGGCTTATGCAGAAACCCGACCCAGGATCAAGGGCCGGTTCGCTAAACGGACCGAAATCGAGTCGGAGGTGGATCGTCTCTACAGCCCCGGCGGTGGTGTCCCAGGGTGTCTCATGCTGGACAACCAATACGGCGTCGTACCATCGTTTTAG	1095	0.5699	MGLKGLRSGWTVPPKPCDSCKIASAALFCRPDSAFLCIACDSKIHCANKLASRHDRVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLARRHERIPVEPFFDSADSIVKASAASFSFVVPTDNGISSDGFPNDDAAWLIPNPNYGSKLMDAPDMKSREMFFSEMDPFLDFDYSNSFQNNNNNNNSAGNDSVVPVQSKPAPMMNHHAEGSCFDIDFCRSKLSSFNYPSQSISQSVSSSSLDVGVVPDGNTVSDISYSFGRNCSDSSGMGSAGSGGGGTQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESEVDRLYSPGGGVPGCLMLDNQYGVVPSF*	365

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy1g1976	364	CDD	Bbox1_BBX-like	16	59	-	-
Ahy1g1976	364	ProSiteProfiles	CCT domain profile.	289	331	IPR010402	GO:0005515
Ahy1g1976	364	SMART	bboxneu5	12	59	IPR000315	GO:0008270
Ahy1g1976	364	SMART	bboxneu5	60	102	IPR000315	GO:0008270
Ahy1g1976	364	Pfam	B-box zinc finger	57	102	IPR000315	GO:0008270
Ahy1g1976	364	ProSiteProfiles	Zinc finger B-box type profile.	12	59	IPR000315	GO:0008270
Ahy1g1976	364	PANTHER	ZINC FINGER PROTEIN CONSTANS-LIKE 4	4	364	IPR045281	GO:0009909
Ahy1g1976	364	ProSiteProfiles	Zinc finger B-box type profile.	55	102	IPR000315	GO:0008270
Ahy1g1976	364	PANTHER	ZINC FINGER PROTEIN CONSTANS-LIKE 5	4	364	-	-
Ahy1g1976	364	Pfam	CCT motif	289	331	IPR010402	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy1g1976	Ahy-Chr1	96566818	96568639	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy1g1976	3	364	C2C2-CO-like Transcription Factor Family	AT5G57660	54.255	1.28e-121	353

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-CO-like	Ahy1g1976		zf-B_box	1.00E-06	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy1g1976	-		-	gmx:100805693	572.778

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy11g3001	11	147638412	147640588	Ahy1g1976	1	96566818	96568639	hybridization

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