Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1966 ATGGGAAGAGCACCATGCTGTGACAAGGCCAACGTGAAGAAAGGACCTTGGTCCCCTGAAGAAGATGCTGCTCTCAAAGCCTACATAGAAAAGAATGGAACTGGAGGCAATTGGATTGCTCTTCCTCAGAAAATTGGGCTGAAGAGATGTGGAAAGAGTTGCAGGCTTAGATGGTTAAACTATTTAAGACCTAACATCAAGCATGGTGGATTTACTGAAGAAGAAGACAACATCATCTGCAGCCTTTACATTAGCATTGGAAGCAGGTGGTCCATTATTGCGGCACAGCTACCTGGAAGGACAGATAACGACATCAAGAACTACTGGAACACTAGATTGAAGAAGAAACTGCTCGGAAGGCGCAAACAATCCAGCTTCAACAGCTCCAAGGACTCCAATATTGGGATGCAAGATGACACATCATGTTCCAATAACAATAGTAATGCCCTAAGCACTTCAGCTCTTGAGAGGCTTCAACTTCATATGCAGCTTCAAAGCCTCCAAAACCCTTTCTCTTTCTACACCAACCCTGCCCTCTGGCCAAAGTTGCATCCTTTTCAAGAAAAGATGATTCACCAGAATCTGCAGCAGCAGCACCAATCTCATAATCTTAACAGTCATGGCTCCAACTCCAATAATAACCCTTTGATGCAGAATACTAATAATAATGCTTTGCCTTCTCCTCATAATCATGTGCTGAATCAAGAAGAAGGGGAAAAGGATACCAAGAATTCAAAGGTTGATCTTTTGGAGAATCCGCTTAATAGTAATGGCTGTTCATCAGTTCTCTTCAATAACAGTAATCCATTATTGCACTCATCAAGTGATGCCATTATTGCACCAAGAGGAGATGGTGTTGAGGGAATTCAGCAGGTTTGTGCTATCCAAAGTGAGCTTGATGAGATTTTGAATCTCAATAGCAACAGAAGAATGTGTTACATTCCACAGGAGGAGGAAGAAGAGGAGGAGGATCAGATTCAACAGATGGCTGATGATGAGTTTGACTGTTTGAGAGAGATGAATAGTAATAATAATAACAATGGTAATTCAAAGGACAGTAATAGTAACTTGATTTGGTGGTCCAATGATTCTTCTGCTGATACCAAATCAGCATCCTCAAATTCTTGGGAGTCAATGTCATCCACTCCAGTTCTTCTGCCAGAAGGGATGTTCCAAGATTATGAACTAGGTTACACTTTATAG 1203 0.4156 MGRAPCCDKANVKKGPWSPEEDAALKAYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSSFNSSKDSNIGMQDDTSCSNNNSNALSTSALERLQLHMQLQSLQNPFSFYTNPALWPKLHPFQEKMIHQNLQQQHQSHNLNSHGSNSNNNPLMQNTNNNALPSPHNHVLNQEEGEKDTKNSKVDLLENPLNSNGCSSVLFNNSNPLLHSSSDAIIAPRGDGVEGIQQVCAIQSELDEILNLNSNRRMCYIPQEEEEEEEDQIQQMADDEFDCLREMNSNNNNNGNSKDSNSNLIWWSNDSSADTKSASSNSWESMSSTPVLLPEGMFQDYELGYTL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1966 400 CDD SANT 71 113 IPR001005 -
Ahy1g1966 400 Gene3D - 70 141 - -
Ahy1g1966 400 Gene3D - 7 68 - -
Ahy1g1966 400 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Ahy1g1966 400 MobiDBLite consensus disorder prediction 194 230 - -
Ahy1g1966 400 PANTHER OS09G0431300 PROTEIN 1 335 - -
Ahy1g1966 400 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ahy1g1966 400 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ahy1g1966 400 MobiDBLite consensus disorder prediction 122 147 - -
Ahy1g1966 400 CDD SANT 16 62 IPR001005 -
Ahy1g1966 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Ahy1g1966 400 MobiDBLite consensus disorder prediction 120 147 - -
Ahy1g1966 400 SMART sant 13 64 IPR001005 -
Ahy1g1966 400 SMART sant 67 115 IPR001005 -
Ahy1g1966 400 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Ahy1g1966 400 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ahy1g1966 400 MobiDBLite consensus disorder prediction 194 243 - -
Ahy1g1966 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ahy1g1966 400 PANTHER OS09G0431300 PROTEIN 1 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1966 Ahy-Chr1 96435549 96437482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1966 1 224 MYB Transcription Factor Family AT5G57620 69.298 3.48e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy1g1966 Myb_DNA-binding 1.60E-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1966 K09422 - gmx:100783440 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3009 11 147735126 147737184 Ahy1g1966 1 96435549 96437482 hybridization