Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1954 ATGAATAATTTCCATCCAAACACTTCTCTTCACCTGAGTCATCATCATCATCATCACTTACCTACTGCAGATGAGAATTCAATCAACCTTGACCTTCTTCTTGAGCCTTCTTCTTCTTCAACTTCTTCATCTTCACCTCTTAGTGGTGGTGCTGGTAATAATTATAATAATATGACAGAGGCAAGGGTATTCTCATGCAACTACTGCCAAAGAAAGTTCTACAGCTCTCAGGCCTTGGGAGGACACCAGAACGCTCACAAGCTCGAAAGGACGCTGGCCAAGAAGACCAGGGAGATCACTTCATCCATGCAAGATCACAGATCAAACTTCATCAATTCTACTACTACTACTACTTCACATCATGCTTTTGGTGTTCTTGAGAACCATGTCCATGGTGCTGGAGGAAGAAGAGATAACAATAGCTTCAGCTACGGCGGTTCAAAACAATTAGGTGTGGCTGCTTCTTGGTCCCGTGGTTACACTTCTACTACTTCTGAAAATGTTCATCAGGAAGATATTAGCCAACTTGACTTGTCATTAAGGCTTTGA 549 0.4226 MNNFHPNTSLHLSHHHHHHLPTADENSINLDLLLEPSSSSTSSSSPLSGGAGNNYNNMTEARVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKTREITSSMQDHRSNFINSTTTTTSHHAFGVLENHVHGAGGRRDNNSFSYGGSKQLGVAASWSRGYTSTTSENVHQEDISQLDLSLRL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1954 182 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Ahy1g1954 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Ahy1g1954 182 PANTHER ZINC FINGER PROTEIN JAGGED 26 182 IPR045320 GO:0003700
Ahy1g1954 182 SUPERFAMILY beta-beta-alpha zinc fingers 60 91 IPR036236 -
Ahy1g1954 182 Gene3D Classic Zinc Finger 53 122 - -
Ahy1g1954 182 PANTHER ZINC FINGER PROTEIN 2 26 182 - -
Ahy1g1954 182 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1954 Ahy-Chr1 96287071 96288244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1954 3 182 C2H2 Transcription Factor Family AT5G57520 44.444 4.64e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1954 - - aip:107620426 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3019 11 147840288 147841416 Ahy1g1954 1 96287071 96288244 hybridization