Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1893 ATGGATGGAACGGAAGATCAGTACAGCGTTTTGATCCGCTTCAATGATCAAGGCTCCACCGACAGCTTGTTCAAGCATTACAATGGCCGCCATTTCTCCTCTCTGGAGGTTGAGGTTTGCCGTGTTCTTTTCACGTTGGATGTGCAGTACACTGGTTCCGTTGAACATGCCCAACCATCCAATGCTACCTCCACTGAACAGCCCACATGTCCAGTTTGCCTTGAGTCGTTAGATCAAGACACCAGTGGAATTCTCACTACTATATGTAATCATTCCTTTCATTGTTCGTGCATATCAAAATGGGCTGATTCTTCTTGTCCTGTGTACCGCTATTGCCAACAGCAAGCAGAAAAATCCATATGTTCTGTTTGTCGGAACACTGAGAACCTTTGGATATGTATTATATGCGGGTTTGTTGGTTGTGGAAGATATAAAGCAGGACATGCCATCATGCACTCAAAAGAGACACAACATTGCTATGCCCTAGATGTGGAAACCAAACGTGTGTGGGATTTTGTGGGAGACAACTACGTTCATAGACTTATTCAGTCCAAAACCGATGGGAAGTTGGTTGAGCTGAACACTCACTGTGTTCATGCAGAGAATGGCTGTGGAAGTTGCAGCTGTGAAGATAATTCTATGAGCGAGGCGTTACTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAGTTGCTTGCTACTCAACTTGAAAACCAAAAATCTGTAAAAGAAGAAACTGAGAGAAAAATCTCTAAAGCTGTTCAAAAGGCTGTCAGTCTTAAACAGCAGAAGATTCAGGCCAAGATTAACAGATGTAACAAAGAGAAGAAATTTCTGAAGGAGCTAAGATATCTTATGACTTGTCTAGATGATGCGAAGCCAGAAGAACAACAGTTGCCTGAGCATAACGAAATAAAAGATGGGCTTTTGTCTGCCTCATCAAAGGAATCCTCGTCAACTACTAACTCTCAGCTTGGCAAAAATCCATAA 996 0.4207 MDGTEDQYSVLIRFNDQGSTDSLFKHYNGRHFSSLEVEVCRVLFTLDVQYTGSVEHAQPSNATSTEQPTCPVCLESLDQDTSGILTTICNHSFHCSCISKWADSSCPVYRYCQQQAEKSICSVCRNTENLWICIICGFVGCGRYKAGHAIMHSKETQHCYALDVETKRVWDFVGDNYVHRLIQSKTDGKLVELNTHCVHAENGCGSCSCEDNSMSEALLNSKVEAIVNEYNELLATQLENQKSVKEETERKISKAVQKAVSLKQQKIQAKINRCNKEKKFLKELRYLMTCLDDAKPEEQQLPEHNEIKDGLLSASSKESSSTTNSQLGKNP* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1893 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 112 IPR013083 -
Ahy1g1893 331 ProSiteProfiles Zinc finger RING-type profile. 70 110 IPR001841 -
Ahy1g1893 331 ProSiteProfiles Zinc finger UBP-type profile. 104 197 IPR001607 GO:0008270
Ahy1g1893 331 Coils Coil 231 284 - -
Ahy1g1893 331 CDD RING-H2_BRAP2 68 111 - -
Ahy1g1893 331 SMART ring_2 70 124 IPR001841 -
Ahy1g1893 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 195 IPR013083 -
Ahy1g1893 331 Pfam BRCA1-associated protein 2 2 57 IPR011422 -
Ahy1g1893 331 SMART Zf_UBP_1 120 169 IPR001607 GO:0008270
Ahy1g1893 331 MobiDBLite consensus disorder prediction 312 331 - -
Ahy1g1893 331 SUPERFAMILY RING/U-box 86 185 - -
Ahy1g1893 331 MobiDBLite consensus disorder prediction 297 331 - -
Ahy1g1893 331 Pfam Zn-finger in ubiquitin-hydrolases and other protein 121 180 IPR001607 GO:0008270
Ahy1g1893 331 PANTHER BRCA1-ASSOCIATED PROTEIN 2 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1893 Ahy-Chr1 95504086 95506636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1893 66 110 C3H Transcription Factor Family AT1G72220 46.809 2.99e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1893 K10632 - gmx:100794688 527.324