Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1888 ATGGAGGACTGTGAGGATTACAAGAATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGTTGGACAGCTGGCAATTGGATGAGGCCTTCTCCGGCGGCTACTACGATTCCAGCTCTCCGGACGGCGGAGCTTCATCGGCGCCATCTAATAAGAACATTGTCTCCGAGAGAAATAGGAGGAAGAAGCTCAATGAAAGACTCTTTGCACTTAGGGCAGTGGTTCCCAACATCACCAAGATGGATAAGGCATCAATCATAAAGGATGCAATTGATTACATAGAGCACTTGCATGAACAAGAGAAAAGGATCCAAGATGAGATAATGGAGCTTGAATCTGAGAAGCTCAAGAATCCAATTATTGCAGCAGCAGGAGACTACGATTTTGAACAGGATCTTCCCGTTCTTCTCAGATCTAAGAAGAAGAGACCCGATAACCTTCTCTTTGATACCTCAGCTTCTTCTTCCTCAAGAAATAACATCAACTATTTTCCTATTGAACTCATTGATCTGAGGGTAACATACAAGGGAGAGAAGATATTTGTGGTGAGCTTGACATGCAGCAAAAGAACAGATACAATGGTGAAACTGTGTGAGGTCTTTGAATCTTTAAAGCTCAAGATCATCACTGCTAATATTACTTCTTTCTCAGGCACACTCTCCGAGACGCTCTTTGTTGAGGCAGATGAAGAAGAAAAAGATCATCTGCAGCTAAGGATCCAAACAGCCATTGCAGCTCTTAATGATCCCCAAAGCCCAATGAGCATCTGA 771 0.4345 MEDCEDYKNYWETNMFLQTQELDSWQLDEAFSGGYYDSSSPDGGASSAPSNKNIVSERNRRKKLNERLFALRAVVPNITKMDKASIIKDAIDYIEHLHEQEKRIQDEIMELESEKLKNPIIAAAGDYDFEQDLPVLLRSKKKRPDNLLFDTSASSSSRNNINYFPIELIDLRVTYKGEKIFVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGTLSETLFVEADEEEKDHLQLRIQTAIAALNDPQSPMSI* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1888 256 Coils Coil 94 117 - -
Ahy1g1888 256 MobiDBLite consensus disorder prediction 36 57 - -
Ahy1g1888 256 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 5 250 - -
Ahy1g1888 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 113 IPR036638 GO:0046983
Ahy1g1888 256 SMART finulus 54 103 IPR011598 GO:0046983
Ahy1g1888 256 MobiDBLite consensus disorder prediction 39 54 - -
Ahy1g1888 256 Gene3D - 49 121 IPR036638 GO:0046983
Ahy1g1888 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Ahy1g1888 256 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Ahy1g1888 256 PANTHER TRANSCRIPTION FACTOR BHLH35 5 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1888 Ahy-Chr1 95475491 95479052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1888 1 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 58.009 7.49e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy1g1888 HLH 8.90E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1888 - - adu:107496381 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3083 11 148467810 148471197 Ahy1g1888 1 95475491 95479052 hybridization
Ahy1g1888 1 95475491 95479052 Ahy14g1293 14 30386579 30397203 PCT
Ahy1g1888 1 95475491 95479052 Ahy4g1193 4 32663745 32674701 PCT
Ahy14g1293 14 30386579 30397203 Ahy1g1888 1 95475491 95479052 PCT
Ahy4g1193 4 32663745 32674701 Ahy1g1888 1 95475491 95479052 PCT