Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1850 ATGCCTCCAAGAATCCTGTTATGCGGCGACGTTTTTGGGCGGCTAAACCAGCTCTTCAAGCGCGTCTCATCGGTGAACAAATCGGCGGGTCCATTCGACGCGCTTTTCTGCGTGGGCCAGTTCTTCCCGGACTCGCCGGAGCAGCTCGACGAGTTCATGGCCTACGTCGAAGGCAGCTCCCAAATTCCGATTCCTACTTACTTCATCGGCGACTATGGCGTCGGTGCCGCTAAAGTATTGCTGGCGGCTTCCAAGGACTCCGCCAATCGTGGTTTCAAGATGGACGGTCTCAGAGTCTGCGAAAACTTGTTCTGGTTGAAAGGCAGTGGCAATTTCTCCCTCTTTGGTTTATGTGTGGCCTATTTATCCGGGAGAAAATCACCGGAAGGGCAACAGTTTGGAACCTACAGTCAGGATGATGTTGATGCTTTGCGAGCAATAGCCGAGGAGCCCGGAATTGTCGACTTGTTCTTGACTAATGAATGGCCAACTGGGGTGACAAATAGAGCTTCAGATATTCCTGCTGGATTCTCGGATTCCATAGGCAGCGATTCAACCATATCGGAGTTAGTACAAGAGATTAAACCACGCTACCATATTGCAGGCACTAAAGGTATATACTATACCCGTGAACCATATTCCAATGTTGATGCTGTGCATGTGACTCGTTTCATAGGGCTTGCTTCTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCACTTTCTCCCACTCCAGCATCTACCATGTCTTCCACTGAGATTGCCATGAAAACCACAAATAGCACCTTATCACCATACACACTCATGGAAAAAAGTACATCTCCGAAGGATGTCTCTAAGAGATCTGGTGATGTGATGTCTGACGATCAATATTGGAGATATGATGTTTCTCAAAAGCGTCGAAGACATGATGCTGGGGAAGGGGAAAAAATATGTTTCAAATTTGTATCTTCTGGTTCTTGCCCACGTGGAGAGAAGTGCAATTTTCGACACGATGGGGATGCAAGGGAACAATATAAGAGAGGGGTTTGCTTTGATTTTTTGAATAAAGGAAAATGTGAAAGGGGTCCAGATTGCAGCTTTAAGCACAGTTTGCAGAATGAAGGCGATATGCCTCCTTCTAGGCGGCCTGGATCTGAAAATACTAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCTCACTTGATCATAAGCATTGGTGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTGCTGATAGTACCAGTTGAGCATATGCCAAGTACCTTGTCTCTGTCATCTGAATCTGAAGTTGAGCTCTGTCGGTTTCAGAACAGTCTTCAGAGGTATTGCAAGAGCCAGGGAAAGGAAGTCATCTTTTTTGAGTGGGTTTCCATACGCGGCACTCATGCAAATCTTCAGGCCATTCCTATTCCATCTTCCAAGGCAGTTATGGTTGAAAAGGCATTCAATTTAGCTGCACAAAAGATGGGATTTAAATTTGTGTCCAAGAGTTTTGATAGCATTTCTGATGGAAGAAAATTTCTGAAGACACAAGCTGATGGGGAGTCAAGTTTGTTCTATGCCGAAATCCCAGGAGGCACAATTCTGCTGCACCGTGTTGAGGAGAAAGTGAGATTCCCTGCCCAATTTGGACGTGAGGTCCTGGCAGGGTTGCTCAATATGGCAGACAATGCAGACTGGAGGAATCGCAAACATAACAAAGAGGAAGAAATGAAAATTGTAGAAGATTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGTTAA 1806 0.4513 MPPRILLCGDVFGRLNQLFKRVSSVNKSAGPFDALFCVGQFFPDSPEQLDEFMAYVEGSSQIPIPTYFIGDYGVGAAKVLLAASKDSANRGFKMDGLRVCENLFWLKGSGNFSLFGLCVAYLSGRKSPEGQQFGTYSQDDVDALRAIAEEPGIVDLFLTNEWPTGVTNRASDIPAGFSDSIGSDSTISELVQEIKPRYHIAGTKGIYYTREPYSNVDAVHVTRFIGLASVGNKDKQKFIHALSPTPASTMSSTEIAMKTTNSTLSPYTLMEKSTSPKDVSKRSGDVMSDDQYWRYDVSQKRRRHDAGEGEKICFKFVSSGSCPRGEKCNFRHDGDAREQYKRGVCFDFLNKGKCERGPDCSFKHSLQNEGDMPPSRRPGSENTRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIVPVEHMPSTLSLSSESEVELCRFQNSLQRYCKSQGKEVIFFEWVSIRGTHANLQAIPIPSSKAVMVEKAFNLAAQKMGFKFVSKSFDSISDGRKFLKTQADGESSLFYAEIPGGTILLHRVEEKVRFPAQFGREVLAGLLNMADNADWRNRKHNKEEEMKIVEDFKSRFQEYDPNC* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1850 601 Gene3D - 382 503 IPR036265 -
Ahy1g1850 601 SUPERFAMILY CCCH zinc finger 306 333 IPR036855 GO:0046872
Ahy1g1850 601 Gene3D - 296 366 - -
Ahy1g1850 601 SMART c3hfinal6 341 366 IPR000571 GO:0046872
Ahy1g1850 601 SMART c3hfinal6 307 334 IPR000571 GO:0046872
Ahy1g1850 601 CDD MPP_CWF19_N 6 230 - -
Ahy1g1850 601 PANTHER CWF19-LIKE PROTEIN 1 2 600 - -
Ahy1g1850 601 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 2 600 IPR040194 -
Ahy1g1850 601 Pfam Protein similar to CwfJ C-terminus 1 382 495 IPR006768 -
Ahy1g1850 601 SUPERFAMILY CCCH zinc finger 339 367 IPR036855 GO:0046872
Ahy1g1850 601 ProSiteProfiles Zinc finger C3H1-type profile. 339 367 IPR000571 GO:0046872
Ahy1g1850 601 Pfam Protein similar to CwfJ C-terminus 2 527 598 IPR006767 -
Ahy1g1850 601 ProSiteProfiles Zinc finger C3H1-type profile. 307 335 IPR000571 GO:0046872
Ahy1g1850 601 SUPERFAMILY HIT-like 386 459 IPR036265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1850 Ahy-Chr1 95115174 95119036 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy1g1850 CwfJ_C_1 1.10E-37 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1850 K24939 - gmx:100782106 1045.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3113 11 148758473 148761624 Ahy1g1850 1 95115174 95119036 hybridization