Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1838 ATGGATGGCGTATTCAACCTCCCTGAAGCCACCAGGAGCGACTTTCTCCGCTCTCTCATGCACACTTTTGGTTGCACATACATATGCCTCTGGCACTGCCACTCATCATCTAATAATTTATTGTTCTTGGATGGGATTTACAATAATGTAAGTAGCACCGTAGCTGAAGAAACGCTTTTTAATCTATATCAGCGTTTAACCTTTGATGCCGCCAATGACGAGTGGGTTCCTGGTGCGGCTTTCAGGAGGCACATGGCCTACTTAGAGCTTCAACAATTGGATCTTCTAAGACTTGCATCCGCCGTTATCCAAACACAATTCTATCTGGAAGCAAGGATTGAGACAGCTATCTTCATGGGGTGCAGCAAAGGGGAAATTGAGCTTGGTTTCTCCACTATCCCTCAAATTGACATGAAAGCAGCAGTGAAGAGTTTATTCCCAGAAGATTTTTCAAGAGAGCAGATTCATCATCCAGCTTCATCGTCTTCATGTTCTTGCCCTAGCGATGAATTCTCATCCTTAGGGGGAGTATTGTTACCCGCACCAGAGGGTGAGCAAGAAGCAATCATAAGAGCAATCCTTCATGTTATTTCTTCTTCTTCTTCACCCGCCACCACTACTTCTCAACCACCACCATATAATAACAGTGCTTTCAGGGCATACCCTTCAACTACTTACAATTTAGTAACAAGTAGCAGCAGAAGGTTTAGTTTAATGAAGAGATCTATAGAATTCTCTAGAACCCTACATTTAATGAGAATTAGAGACCGCTTTCATTTTCAACGTCAACATCAACCGCCTCATCCCCTCATAATTGGTACCCAGAATGCTAATAATAATAAGCATCTTCATCACATCATATTAGAGAGAAGAAGACGCGAGAACGAAAACAAGTGTTTCCGGGAACTTAGGGCATTACTTCCTCCAGGAACTAAGAAACACAAATCTTCGGTTCTTATAGCGGCAAAGGAGGCATTGAAGTCTTTAATTGCTGAAATTGAAAAGCTTAACATAAGAAACCAGCAGTTAAAAACACTACTTGGTTCATCATCATCAAGCTATGGAAATGTTCATATCTCCTCATCACCATCATCATCAAATGAGAGATTGAACGTTGCGGTGTCGCATGTAGCGGGGTCGAGTTCATCGGAAGAGAGAATGGTGGATCTGGAAGTCGCTGTCAGAGGAGAAAGCTCGTCTCATCATCATCAATCGGATATTATGATTCGCATATTGGAATTCTTGAAAAGCCTTCAGAACCTCAGCTTCGTTTCCATGGCCGCAAATACTACTACTAATACACAAGGCACAACCATCACCCAAATCATCTTCAGAATAAGGATTCTTCAGGGAAGTGAATGGGACGAGTCTGGCTTCGTGGAAGCAGTGAGAAGAGTTGTGTCTAACTTACCTTAA 1416 0.4244 MDGVFNLPEATRSDFLRSLMHTFGCTYICLWHCHSSSNNLLFLDGIYNNVSSTVAEETLFNLYQRLTFDAANDEWVPGAAFRRHMAYLELQQLDLLRLASAVIQTQFYLEARIETAIFMGCSKGEIELGFSTIPQIDMKAAVKSLFPEDFSREQIHHPASSSSCSCPSDEFSSLGGVLLPAPEGEQEAIIRAILHVISSSSSPATTTSQPPPYNNSAFRAYPSTTYNLVTSSSRRFSLMKRSIEFSRTLHLMRIRDRFHFQRQHQPPHPLIIGTQNANNNKHLHHIILERRRRENENKCFRELRALLPPGTKKHKSSVLIAAKEALKSLIAEIEKLNIRNQQLKTLLGSSSSSYGNVHISSSPSSSNERLNVAVSHVAGSSSSEERMVDLEVAVRGESSSHHHQSDIMIRILEFLKSLQNLSFVSMAANTTTNTQGTTITQIIFRIRILQGSEWDESGFVEAVRRVVSNLP* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1838 471 SMART finulus 286 335 IPR011598 GO:0046983
Ahy1g1838 471 Pfam Helix-loop-helix DNA-binding domain 283 329 IPR011598 GO:0046983
Ahy1g1838 471 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Ahy1g1838 471 Coils Coil 319 346 - -
Ahy1g1838 471 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 470 - -
Ahy1g1838 471 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 345 IPR036638 GO:0046983
Ahy1g1838 471 CDD bHLH_AtbHLH_like 285 336 IPR045239 -
Ahy1g1838 471 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 470 IPR044658 -
Ahy1g1838 471 Gene3D - 277 352 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1838 Ahy-Chr1 94847082 94850701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1838 1 470 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 34.686 2.09e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy1g1838 HLH 2.30E-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1838 - - ahf:112776694 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3123 11 148891367 148894521 Ahy1g1838 1 94847082 94850701 hybridization
Ahy1g1838 1 94847082 94850701 Ahy3g1887 3 41876544 41884656 PCT
Ahy3g1887 3 41876544 41884656 Ahy1g1838 1 94847082 94850701 PCT