LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy1g1833	ATGGTGCTGCTTGCTCACGCTGGAAGCGGTGGCGGCCAGGCTTGCTCACCGCCACAGTTCAACAAAGCTATTGCGGAAGAAAAACCAGTGGAAATGGTGAGAGTCAAATCAGAGCAAGTGACGTCTTCCTGCCGCTTCTTGCAGCAAAACGACGACGTTTCAAGCGACGAGTCTGATAAGAAGAAGAGCAACTCGGAAGTGACGGAAGAAGAAGAGCCTCGCGTCAAAGAGGAGGTTGCTGATGACGGCGCCGTTAACGTGTCGTCATCTTCGTCGTCGGTGGAGTTGCCGAAACCGATGGAAGGGCTTAACGAGGCGGGTCCGCCACCGTTTCTAAGGAAGACGTACGAGATGGTGGATGATCCGGAAACCGACCCGATTGTTTCGTGGAGCGAGAACCGCGATAGCTTCATCGTTTGGGAGTCTCACGAGTTCGCCAAAGTGCTTCTTCCAAAGTATTTCAAGCACAGCAACTTCTCCAGCTTCATTCGCCAGCTCAATACCTATGGCTTTAGGAAGGTTGATTCAGATCGTTGGGAGTTTGCAAACGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTGAAGAACATAAGGAGGAGAAGCAAGTACAACAAACTGCATCAAGGAGCTTTCATCGACCCAGCTAAGCCTTGCCTTGAGGCTGAAGTTGAGAAGCTGAAGGAGGACCAAAACATACTCAAACTTGAAATTCTGAAGCTGAGACAACAGCAAGAAAGTTCCCACGTTCATATCTCAAGCGTTCAGGACCGGATTCAGAACGTCCAGACGAAGCAGTATCAGATGATATATTTCCTCACCAGAATGGCCAGAAAGCCAGCCTTTGTGGAACAGCTCCTCCAAAAGATTAAGAGGAAGAGGGAGCTCGATGGCACCGACATGCTCAAGAGGCGCAGATTGCTGGAACCAACGCCTAGTGTTGATTATAGATGCCAACAAGGTCATCAACAATTGTCTACATTGCAATCTGAACTTGATGGACTATTGTCTGAAAATGTGATGAGCACTAGCAATAAGATAGAGCAAACTGTTCCTTCTCCTCTGGAAGAGAACCTATTGGGGGAAAATAATGGTGGTGCTGATGAAGAACTTGATGTGAATGACTCAAATATTTATCTTGAGTTGGAGGATTTGATTACTAAGCCAACAGATTGGGTTGGTTCTGCATCTGCATCTGCTGGTGGCTTGGTGGGGCAAACTAGTTGA	1224	0.4804	MVLLAHAGSGGGQACSPPQFNKAIAEEKPVEMVRVKSEQVTSSCRFLQQNDDVSSDESDKKKSNSEVTEEEEPRVKEEVADDGAVNVSSSSSSVELPKPMEGLNEAGPPPFLRKTYEMVDDPETDPIVSWSENRDSFIVWESHEFAKVLLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQGAFIDPAKPCLEAEVEKLKEDQNILKLEILKLRQQQESSHVHISSVQDRIQNVQTKQYQMIYFLTRMARKPAFVEQLLQKIKRKRELDGTDMLKRRRLLEPTPSVDYRCQQGHQQLSTLQSELDGLLSENVMSTSNKIEQTVPSPLEENLLGENNGGADEELDVNDSNIYLELEDLITKPTDWVGSASASAGGLVGQTS*	408

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy1g1833	407	MobiDBLite	consensus disorder prediction	39	111	-	-
	Ahy1g1833	407	SMART	hsfneu3	107	200	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy1g1833	407	Gene3D	-	104	201	IPR036388	-
	Ahy1g1833	407	MobiDBLite	consensus disorder prediction	1	20	-	-
	Ahy1g1833	407	ProSitePatterns	HSF-type DNA-binding domain signature.	150	174	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy1g1833	407	SUPERFAMILY	"Winged helix" DNA-binding domain	107	200	IPR036390	-
	Ahy1g1833	407	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-9	80	388	-	-
	Ahy1g1833	407	PRINTS	Heat shock factor (HSF) domain signature	149	161	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy1g1833	407	PRINTS	Heat shock factor (HSF) domain signature	111	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy1g1833	407	PRINTS	Heat shock factor (HSF) domain signature	162	174	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy1g1833	407	MobiDBLite	consensus disorder prediction	52	81	-	-
	Ahy1g1833	407	Pfam	HSF-type DNA-binding	111	200	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ahy1g1833	407	Coils	Coil	216	243	-	-
	Ahy1g1833	407	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	80	388	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy1g1833	Ahy-Chr1	94784209	94786865	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy1g1833	97	391	HSF	AT2G26150	44.625	4.01e-85	261

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Ahy1g1833		HSF_DNA-bind	7.30E-33	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy11g3127	11	148913678	148916301	Ahy1g1833	1	94784209	94786865	hybridization