Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1800 ATGCCGGTGAATCTGACGGCGCACGCGATCCCGGCGATCGTAGCAGGCGACGTTAACTCGAAGCCACTGTTGCAGGTTCTGGAAATCAAGTTGATTTCGAACAGCAAGCAGCAGGAGAGGTACCGGCTTCTGCTATCCGATGCGGTTTCTTCTCAGCACGCTATGCTTGCCACTCAGCTCAACGATCGGGTCACAACCGGACACGTTAAGAAAGGTTCAATCGTTCAGCTCATCGAGTACATTTGCAGTCCTATTCAAAACCGCAAGATTGTTGTGGTGCTGAACATGGAAACTATAATACCAGAATGCGAGATCATTGGAAATCCAATATCATTTGTGGAATCTGATTTACCATCCCAGGGTGGTTCACTAAGTAATACAATGCAGAACTTGTCCAAGAGTAGTTATTATCAGCTGCCACCGCAAAATACAAGTTATAATGTCGAGAATTTCCAGCTGCCACCGAAGAATGCAAGTTCCTATGTGCAAAATTCCCGGCCAACTGTTCAAACTGCTTACAAACCGCCACCAGTTTACAAAGGCCAAGGTGCAATTCTGAGGAATGAGGCCCCATCACGTGTTATTCCTATATCTGCTCTGAATCCTTATCAAGGTCGGTGGGCCATCAAGGCAAGGGTGACTGCAAAGGGGGATCTGCGCCGCTATAATAATGCCCGGGGAGATGGTAAAGTCTTCTCCTTTGATCTCCTTGACTCTGAAGGTGGTGAAATACGAGTGACCTGTTTTAATGCTGTTGTTGATCGATTCTATGATGCGATTGAGGTTGGAAGAGTTTACTTGATATCTAAAGGTAGCCTGAAACCTGCACAGAAGAACTTTAACCATTTGAAGAATGACTGGGAAATTCTTTTGGAGTCGACATCAACTGTTGAACTTTTCCCCGAGGAAGATGGTTCTATACCTAAACAGCAATTTTCGTTTAAACCTATCAATGATATTGAGAACGTTGACAATAACTCCATACTTGATGTTATTGGGGTTGTGACTAGTGTGAATCCATCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCAGAAAAGAATTTTGAATCTGAAGGACTGGACTGGAAGGAGTGTTGAACTGACCCTTTGGGGTGAATTTTGCAACAAGGAAGGGAAAAATTTGCAAGAAATGGTCGATGCTGGATTGTTTCCCATTCTGGCAGTCAAAGCTGGGAAGGTCAATGACTTTAGTGGAAAATCCATAGGGACTATCTCTGCCACACAGTTTTTCATAAATCCTGATTTTCCTGAGGCACGTAGCTTAAGAGAATGGTTTGATCGAGTGGGAAAAGATTCTGCTTCTCTGTCCATTTCTAAGGATATCATACCCGGAGGATCTAAGAATGATGTACGTAAAACTCTGTCTCAGATCAAGGATGAAGGTCTTGGGCGTTCGGATAAGCCAGATTGGATAACAGTGAGGGCAGCTGTATCTTTCATCAAGACAGATTCGTTCTGTTACACAGCTTGCCCTCTGAAGATTGGAGAGCGACAGTGCAATAAGAAAGTGACCAAATCAGGAAACTCGAGGTGGCAGTGTGATAGGTGCAACCAAGAGTTTGATGAGTGCGATTACCGGTTTCTTCTTCAAGCTCAAATTCTGGATCACACTGGAATTGCTTGGGTAACTGCTTTTCAGGAAACAGGGGAAGAGATTATGGGCTTCTCTGCGAAGGAATTGTACTTATTGAAGCATGAGCAAGAGGATGATGAGAAGTTCATAGGAATAATCAAGAGTAGACTGTTCAATGAGTTTGTCTTGAGGCTGAAAATCAAAGAGGAATTATATGGTGATGAACAGAGGTTGAAGATTACAGTAGCAAAGGCAGATAAGGTGGATTACTCTTCGGAGTGTAAGTACGTGCTTGATTTGATTTCGAAATTCGGTAGGCAGTAA 1923 0.4368 MPVNLTAHAIPAIVAGDVNSKPLLQVLEIKLISNSKQQERYRLLLSDAVSSQHAMLATQLNDRVTTGHVKKGSIVQLIEYICSPIQNRKIVVVLNMETIIPECEIIGNPISFVESDLPSQGGSLSNTMQNLSKSSYYQLPPQNTSYNVENFQLPPKNASSYVQNSRPTVQTAYKPPPVYKGQGAILRNEAPSRVIPISALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSEGGEIRVTCFNAVVDRFYDAIEVGRVYLISKGSLKPAQKNFNHLKNDWEILLESTSTVELFPEEDGSIPKQQFSFKPINDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETQKRILNLKDWTGRSVELTLWGEFCNKEGKNLQEMVDAGLFPILAVKAGKVNDFSGKSIGTISATQFFINPDFPEARSLREWFDRVGKDSASLSISKDIIPGGSKNDVRKTLSQIKDEGLGRSDKPDWITVRAAVSFIKTDSFCYTACPLKIGERQCNKKVTKSGNSRWQCDRCNQEFDECDYRFLLQAQILDHTGIAWVTAFQETGEEIMGFSAKELYLLKHEQEDDEKFIGIIKSRLFNEFVLRLKIKEELYGDEQRLKITVAKADKVDYSSECKYVLDLISKFGRQ* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1800 640 Gene3D - 306 444 IPR012340 -
Ahy1g1800 640 SUPERFAMILY Nucleic acid-binding proteins 460 637 IPR012340 -
Ahy1g1800 640 Pfam OB-fold nucleic acid binding domain 208 281 IPR004365 GO:0003676
Ahy1g1800 640 Pfam Replication protein A OB domain 317 421 IPR031657 -
Ahy1g1800 640 PANTHER REPLICATION FACTOR A 1, RFA1 2 634 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy1g1800 640 CDD RPA1_DBD_A 196 299 - -
Ahy1g1800 640 Pfam Replication factor-A protein 1, N-terminal domain 5 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Ahy1g1800 640 Gene3D - 449 637 IPR012340 -
Ahy1g1800 640 CDD RPA1N 9 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Ahy1g1800 640 CDD RPA1_DBD_B 328 435 - -
Ahy1g1800 640 SUPERFAMILY Nucleic acid-binding proteins 194 306 IPR012340 -
Ahy1g1800 640 CDD RPA1_DBD_C 463 636 IPR013955 -
Ahy1g1800 640 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 636 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy1g1800 640 SUPERFAMILY Nucleic acid-binding proteins 311 438 IPR012340 -
Ahy1g1800 640 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Ahy1g1800 640 Pfam Replication factor-A C terminal domain 479 629 IPR013955 -
Ahy1g1800 640 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 634 - -
Ahy1g1800 640 Gene3D - 4 113 IPR012340 -
Ahy1g1800 640 Gene3D - 193 301 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1800 Ahy-Chr1 94280604 94283682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1800 24 636 Core DNA Replication Machinery Family AT2G06510 67.572 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1800 K07466 - gmx:100792409 994.956