Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1794 ATGAAAGCTTCTAAGATGGGGAGAAGCCCTTGTTGCTCAAAAGATGAGGACTTGAAAAGAGGTGCTTGGACTGCTGATGAAGACAAAATCCTCATAGACTACATTAGGGTCCATGGCCATGGAAGATGGAGAAACCTCCCCCAAAAAGCAGGTTTAAAAAGATGTGGCAAAAGTTGTAGACTGCGATGGTTGAACTATCTAAGACCAGACATCAAAAGAGGCAATATATCCTCTGATGAAGAAGAACTCATCATCAGACTTCACAACCTCCTGGGAAATAGGTGGTCTCTAATAGCTGGGAGGCTTCCGGGGAGAACAGACAATGAGATCAAGAACTATTGGAACACCAACTTGAGTAAGAGGATGAAAGATAACAAGGATCACAACAAAGAAACAACCACCTCTTCTTCGAATCCAAAACACCCTCAAACAGAACCAACCCCACCTTTTAAGATTGACTTCCCTGTAATCCGAACAAAGGCTACAAAGTGCTCAAAGCAATTACTCATAAATAACAATGCACGACAATCAACACCGGTACCTTTGCTTCTGGATGCTTCTGCTGCTGCTGCTGATGATGATTCTGAAGCCAACAACAATAAGAATATCGTTTCATCAATAGCAAGTAACCACAAAGAAGTACTCTCAAAGAACTACAATAGTAATGATGAGTTTTTGCCCTTCTTCAATGAAGATGATGACAAAGAAATACTCTCAAATACAGATTTGCTAATAGACGATTATTGTAATCTTACCGATGCTGATGGCGGCTTAAATGATCTTATCAATTCTGATGTCTCTGATCTCTGCTACGAGCTATTATTATCGCCTTATTCGGACCAACCCACCACCATCTTCTCCGATGACATCCTCAATCAATGGACACATGGCTATTTCGATGATGCTGATGATCACATTAATCATGATGATGACTCAATCATTGACCGTCATTGTCACCAGTCAAATGCCAAGGAGATAGAATAA 984 0.4075 MKASKMGRSPCCSKDEDLKRGAWTADEDKILIDYIRVHGHGRWRNLPQKAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLSKRMKDNKDHNKETTTSSSNPKHPQTEPTPPFKIDFPVIRTKATKCSKQLLINNNARQSTPVPLLLDASAAAADDDSEANNNKNIVSSIASNHKEVLSKNYNSNDEFLPFFNEDDDKEILSNTDLLIDDYCNLTDADGGLNDLINSDVSDLCYELLLSPYSDQPTTIFSDDILNQWTHGYFDDADDHINHDDDSIIDRHCHQSNAKEIE* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1794 327 CDD SANT 77 118 IPR001005 -
Ahy1g1794 327 MobiDBLite consensus disorder prediction 120 134 - -
Ahy1g1794 327 Gene3D - 17 73 - -
Ahy1g1794 327 Gene3D - 76 146 - -
Ahy1g1794 327 MobiDBLite consensus disorder prediction 119 152 - -
Ahy1g1794 327 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Ahy1g1794 327 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 6 272 - -
Ahy1g1794 327 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
Ahy1g1794 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 71 IPR017930 -
Ahy1g1794 327 SMART sant 72 120 IPR001005 -
Ahy1g1794 327 SMART sant 19 69 IPR001005 -
Ahy1g1794 327 CDD SANT 22 67 IPR001005 -
Ahy1g1794 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 122 IPR017930 -
Ahy1g1794 327 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Ahy1g1794 327 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Ahy1g1794 327 Pfam Myb-like DNA-binding domain 73 118 IPR001005 -
Ahy1g1794 327 PANTHER TRANSCRIPTION FACTOR TT2 6 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1794 Ahy-Chr1 94234285 94236385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1794 6 122 MYB Transcription Factor Family AT4G05100 70.085 1.73e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy1g1794 Myb_DNA-binding 1.20E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1794 K09422 - gmx:100802704 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3160 11 149167157 149168948 Ahy1g1794 1 94234285 94236385 hybridization
Ahy13g2320 13 49754471 49757631 Ahy1g1794 1 94234285 94236385 PCT
Ahy3g2033 3 46235904 46238437 Ahy1g1794 1 94234285 94236385 PCT