Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1790 ATGATGAATGGTGGAAGCAGCAGGAGCAGCAGGTTCCCATTCACACCATCACAGTGGCAAGAGCTTGAACACCAAGCACTCATCTACAAATACATGGCTTCCGGCATCTCCATCCCCCCTGATCTCCTCTTCTCCATCAAAAGAGGCTACCACCTTGACCACTCTAGGCTCTTCCCTCACCACCACCCTCCACAACACCTTGGATGGAACTATCTGCAGATGGGTCTGGGAAGAAAGATAGACCCTGAACCAGGAAGATGCAGAAGAACCGATGGAAAAAAATGGAGATGCTCTAAGGAAGCATATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGCAAGAACCGTTCAAGAAAGCCTGTGGAACAACAACAACCTTTGAAACAATCACCAGCAGCAGCACCAACGAACACCGATGATGCTGCTGCTTCTTCTCATCATGCTCCATCTTCTTCAACCACAACAACAATCTTATCAATCACCAACAACAATAACTCTCTCTCTCCTCTCTCATCTGCATCACTGTCCTCTCATCATGACCTTTATCATCAACACCAACACCAACACTCCTTCCTCTACCACCACCAACCCTCTTCAAGGTCCTCCAACTCCATTGGCTTCTCTTTTCAGGACAACAACGCTGCTCCTTTGTTTCTTGACACCCAGACCAACACCGACTGCAGAGAGAGGTATATTTATGGGCTGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACTGAACCTTCGGGAACAATGAGAAGCTTCTCTGCTTCGTCCATGGATGATTCATGGCAGCTGACACCACTCACCATAAGCTCCTCAACTTCTTCGAAGCAGAGGAGCTGCTCTGGCTTGTCCAATGAAAACAACAACGAGTACTCTTACTTGCAGCTTCACCACCATAGCTTCAACGCTGATCATAACAACAACAACAACTCAAAGCAAAGAGAAGCAGAACAAGATCATCATCAGCAGGGTGGTGGTTGCTACATGGCTCTTGGGAAAGAAGAAGAGCCACATCATCAGAAGACCACCGTTCATCGTTTCTTCGATGAATGGCCTCACAAGAGTAGAGGAGGCTCATCCTGGCTTGATTTGGATGATAAATCTTCCACTACTCAGCTTTCCATTTCCATCCCCACATCCTCTCATGACTTCACAACCTTCACTTCAAGGAACACTAGAGATGGTTAA 1200 0.4717 MMNGGSSRSSRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFSIKRGYHLDHSRLFPHHHPPQHLGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQQQPLKQSPAAAPTNTDDAAASSHHAPSSSTTTTILSITNNNNSLSPLSSASLSSHHDLYHQHQHQHSFLYHHQPSSRSSNSIGFSFQDNNAAPLFLDTQTNTDCRERYIYGLKEEVDEHAFFTEPSGTMRSFSASSMDDSWQLTPLTISSSTSSKQRSCSGLSNENNNEYSYLQLHHHSFNADHNNNNNSKQREAEQDHHQQGGGCYMALGKEEEPHHQKTTVHRFFDEWPHKSRGGSSWLDLDDKSSTTQLSISIPTSSHDFTTFTSRNTRDG* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1790 399 PANTHER - 3 375 IPR031137 GO:0005634|GO:0006351|GO:0032502
Ahy1g1790 399 MobiDBLite consensus disorder prediction 108 162 - -
Ahy1g1790 399 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ahy1g1790 399 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ahy1g1790 399 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ahy1g1790 399 ProSiteProfiles WRC domain profile. 81 125 IPR014977 -
Ahy1g1790 399 MobiDBLite consensus disorder prediction 305 330 - -
Ahy1g1790 399 Pfam WRC 82 124 IPR014977 -
Ahy1g1790 399 PANTHER GROWTH-REGULATING FACTOR 5 3 375 - -
Ahy1g1790 399 MobiDBLite consensus disorder prediction 122 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1790 Ahy-Chr1 94207405 94209468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1790 2 127 GRF Transcription Factor Family AT3G13960 66.923 5.86e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Ahy1g1790 WRC 8.60E-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1790 - - ahf:112758812 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3163 11 149197746 149200399 Ahy1g1790 1 94207405 94209468 hybridization
Ahy1g1790 1 94207405 94209468 Ahy13g2327 13 49987005 49990764 PCT
Ahy1g1790 1 94207405 94209468 Ahy3g2039 3 46790421 46794088 PCT
Ahy13g2327 13 49987005 49990764 Ahy1g1790 1 94207405 94209468 PCT
Ahy3g2039 3 46790421 46794088 Ahy1g1790 1 94207405 94209468 PCT