Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1759 ATGCAGCAACACAGGTTGAGACAGCATGCTATGATGCAGCACTCTCTCTACCACCACCCTGCTCTCCTAACTCCTCCACAGATTGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTTCATGCCGCAGTGTCTATGTTGGCAACATTCATCCTCAGGTTTCAGAATCCCTTCTTCAAGAGCTTTTTTCAAGTGCAGGCGCACTTGAAGGATGCAAGCTCATTAGGAAAGATAAGTCGTCCTATGGCTTTGTTGATTACTTTGATCGCAGTGCAGCTGCATTTGCAATTGTAACTCTCAATGGAAGGCACATCTTTGGCCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACTTCAGGTCATTTTAATATTTTTGTTGGTGACCTTAGCCCTGAGGTTACAGATGCAACCTTGTTTGCTTGCTTCTCTGTGTATCCCACTTGTTCAGATGCGAAGGTAATGTGGGATCAGAAAACAGGGCGGTCAAGGGGATTTGGCTTTGTTTCTTTTCGAAATCAGCAGGATGCCCAAAGTGCCATAAATGATTTAACTGGTAAGTGGCTTGGAAGTAGACAGATACGTTGTAACTGGGCCACTAAAGGGGCTAACAGCAATGATGAAAAGCAGAGTTCGGATTCTAAAAGTGTTGTGGAGTTAACTAATGGAACATCGGAAGAACCGCAGCAAGTAACCAGTGATGATGCACCAGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTCGCTCCAGAGGTTACATCTGTTGATCTTCATCACCATTTTCATGCCCTTGGTGTTGGAATTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGATTTGTGAGATACAGTACACATGATGAAGCAGCTCTTGCTATCCAGATGGGTAATGCTCGGATTCTGTTTGGCAAACCTGTCAAGTGTTCATGGGGTAGCAAGCCCACTCCTCCTGGAACAGCCTCTACTCCTCTTCCCCTACCTAGTACTGCACATGTGCCTGGCTTTTCTCCTGTGGGACTTGCAGCGTATGAACGTCAAATGGCTCTGAGCAAGATGGGTGGTGCGCATGCGGCACTTATGCATCAGCAGAATCAGCATGCTGCCATGAAGCAGGCAGCCATGGGAATGGGTGCTCCTAACCAGCACCTTATGTACTATCAGTAA 1203 0.4613 MQQHRLRQHAMMQHSLYHHPALLTPPQIEPILSGNLPPGFDSSSCRSVYVGNIHPQVSESLLQELFSSAGALEGCKLIRKDKSSYGFVDYFDRSAAAFAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPTCSDAKVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGANSNDEKQSSDSKSVVELTNGTSEEPQQVTSDDAPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGIIEDVRVQRDKGFGFVRYSTHDEAALAIQMGNARILFGKPVKCSWGSKPTPPGTASTPLPLPSTAHVPGFSPVGLAAYERQMALSKMGGAHAALMHQQNQHAAMKQAAMGMGAPNQHLMYYQ* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1759 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 319 IPR000504 GO:0003723
Ahy1g1759 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Ahy1g1759 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Ahy1g1759 400 Gene3D - 125 224 IPR012677 -
Ahy1g1759 400 SUPERFAMILY RNA-binding domain, RBD 45 207 IPR035979 GO:0003676
Ahy1g1759 400 SMART rrm1_1 132 205 IPR000504 GO:0003723
Ahy1g1759 400 SMART rrm1_1 253 322 IPR000504 GO:0003723
Ahy1g1759 400 SMART rrm1_1 47 116 IPR000504 GO:0003723
Ahy1g1759 400 Gene3D - 33 124 IPR012677 -
Ahy1g1759 400 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 2 391 - -
Ahy1g1759 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 391 - -
Ahy1g1759 400 CDD RRM1_TIA1_like 48 118 - -
Ahy1g1759 400 SUPERFAMILY RNA-binding domain, RBD 241 330 IPR035979 GO:0003676
Ahy1g1759 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Ahy1g1759 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Ahy1g1759 400 Gene3D - 229 330 IPR012677 -
Ahy1g1759 400 SMART rrm2_1 47 116 IPR003954 GO:0003676
Ahy1g1759 400 SMART rrm2_1 132 205 IPR003954 GO:0003676
Ahy1g1759 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Ahy1g1759 400 CDD RRM3_TIA1_like 252 326 - -
Ahy1g1759 400 MobiDBLite consensus disorder prediction 209 250 - -
Ahy1g1759 400 CDD RRM2_PUB1 132 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1759 Ahy-Chr1 93862381 93866866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1759 42 320 Eukaryotic Initiation Factors Gene Family AT3G16380 26.014 1.26e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1759 K13201 - gmx:100813736 715.687