Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1727 ATGTCAGCCACAGAACCACCTTCATTCCAAGAAGCAGCGCGATGTGTTGTCTGCAATTGCAGTTTCAACACTTTCAGGAGACGGGTGTATATGCAGCATCACTGTCGATCCTGTGGGAGAACTTTGTGCAATGAACATTCATCAAATCAAATGGCTTTACCTCAATTTGGCATTTACTCAAGTGTCCGAGTATGTGCTGATTGTTTCAACAATTCAAGGTCTGGGAATGGTGTAAGACAGGCTTCTTCGGGTGGAGTGAACAGCATAACGGATACAATTTCTAAAATAGATATCGATGCCAATGATGATCCAAAAGCCATTCCTACTGCAGGGAGTACACTTGCATTGGGCATTAAAGAGTGTATGTGTGGAATGCCTCTTTGCATTTGTGAGTCTGAGGCTCCCACACCTTCCTCTTCTGCACAACCTCGGCAGATATCCTCTCCGGCTATTACCTCTGAATCAAATCCTAAACCTAAGAAGGCAGATACTGCTCCAAAAAATAGAAGTTCCAGTTCATCTAGCAAGTTTAGTTCTGCTTTTGGTCATGTAACCAATGGGACATCGGAGAGAAGCCAGACCGATTATGGAGCCAATGGAGAGGGTTTAAGAGAAGCAATAAAAAATGGTGACGTAGCTGCTGTCAAGAAACTTCTTGATGAGGGTGTGGATGCAAATTACAGGGACAAGCAAGGGCTATCGTTACTGCATTTGGCTGCGGTCTTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCGGGTGCGAGCCTGGAGTACAAAAATGCACAAGGAGAAACACCTTTAGATTGTGCACCAGCTACCTTACAGTACAAAATGCGAAAGAAGATAGAAGACGGTGGAACAATGAACCAAAGCATTTGA 885 0.4362 MSATEPPSFQEAARCVVCNCSFNTFRRRVYMQHHCRSCGRTLCNEHSSNQMALPQFGIYSSVRVCADCFNNSRSGNGVRQASSGGVNSITDTISKIDIDANDDPKAIPTAGSTLALGIKECMCGMPLCICESEAPTPSSSAQPRQISSPAITSESNPKPKKADTAPKNRSSSSSSKFSSAFGHVTNGTSERSQTDYGANGEGLREAIKNGDVAAVKKLLDEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYKNAQGETPLDCAPATLQYKMRKKIEDGGTMNQSI* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1727 294 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 9 73 IPR017455 -
Ahy1g1727 294 SUPERFAMILY FYVE/PHD zinc finger 11 74 IPR011011 -
Ahy1g1727 294 SUPERFAMILY Ankyrin repeat 203 274 IPR036770 -
Ahy1g1727 294 MobiDBLite consensus disorder prediction 134 198 - -
Ahy1g1727 294 Pfam FYVE zinc finger 10 71 IPR000306 GO:0046872
Ahy1g1727 294 SMART fyve_4 1 74 IPR000306 GO:0046872
Ahy1g1727 294 MobiDBLite consensus disorder prediction 166 196 - -
Ahy1g1727 294 ProSiteProfiles Ankyrin repeat profile. 198 230 IPR002110 GO:0005515
Ahy1g1727 294 MobiDBLite consensus disorder prediction 134 159 - -
Ahy1g1727 294 SMART ANK_2a 198 227 IPR002110 GO:0005515
Ahy1g1727 294 SMART ANK_2a 231 260 IPR002110 GO:0005515
Ahy1g1727 294 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 3 287 - -
Ahy1g1727 294 Gene3D - 181 279 IPR036770 -
Ahy1g1727 294 CDD FYVE_scVPS27p_like 9 69 - -
Ahy1g1727 294 Pfam Ankyrin repeats (3 copies) 205 272 IPR002110 GO:0005515
Ahy1g1727 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 74 IPR013083 -
Ahy1g1727 294 ProSiteProfiles Ankyrin repeat profile. 231 263 IPR002110 GO:0005515
Ahy1g1727 294 ProSiteProfiles Ankyrin repeat region circular profile. 231 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1727 Ahy-Chr1 93309185 93312910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1727 209 269 MAP Kinase Kinase Kinase AT4G18950 40.984 2.63e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1727 - - ahf:112696126 583.563