LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy1g1539	ATGAAGTGCATAAAGAACGAGACAAGTAGGCAAGTAACATTTTCAAAGAGAAGAAATGGTTTGCTTAAGAAGACTTTTAAGCTTTCAGTTCTCTGTGATGCTGAAGTCGCACTCATCATTTTCTCTACCAGAGGCAAGCTCTATGAGTTCTCCAGCTCTAGTGTAAACAAAATAGTGGAACGCTATCAAAGGAAGGTCAAGGATCTACATAGCCTCAACACCAAACAAATCCAAGAAAATACACAGGTAAAGGAAGGTGATGACATCAACATCACAAAGAAGCTAGAGCAACTAGAAGTTTCTAAAAGAAAGCTTTTGGGAGATGGTTTGGATTCATGCCCCATTGAAGAGTTACAACAGATAGAGAATCAGCTCGAACGAAGCTTAACCAAAGTTAGGGCAAGAAAGAACCAATTGTTCAGGGAGCAAATAGAGACGCTAAAGGAACAGGAAAAATGCCTTCTTGAAGAAAATAGAAAATTGAAAGAGAAGTTCACGCCATGA	504	0.3909	MKCIKNETSRQVTFSKRRNGLLKKTFKLSVLCDAEVALIIFSTRGKLYEFSSSSVNKIVERYQRKVKDLHSLNTKQIQENTQVKEGDDINITKKLEQLEVSKRKLLGDGLDSCPIEELQQIENQLERSLTKVRARKNQLFREQIETLKEQEKCLLEENRKLKEKFTP*	168

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy1g1539	167	SMART	madsneu2	1	53	IPR002100	GO:0003677\|GO:0046983
	Ahy1g1539	167	Coils	Coil	115	164	-	-
	Ahy1g1539	167	Gene3D	-	6	80	IPR036879	GO:0003677\|GO:0046983
	Ahy1g1539	167	PANTHER	MADS-BOX PROTEIN SOC1	1	165	-	-
	Ahy1g1539	167	CDD	MADS_MEF2_like	1	63	IPR033896	GO:0000977\|GO:0045944
	Ahy1g1539	167	ProSiteProfiles	K-box domain profile.	81	167	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ahy1g1539	167	ProSiteProfiles	MADS-box domain profile.	1	54	IPR002100	GO:0003677\|GO:0046983
	Ahy1g1539	167	PANTHER	MADS BOX PROTEIN	1	165	-	-
	Ahy1g1539	167	Pfam	K-box region	89	165	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ahy1g1539	167	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	4	50	IPR002100	GO:0003677\|GO:0046983
	Ahy1g1539	167	SUPERFAMILY	SRF-like	1	67	IPR036879	GO:0003677\|GO:0046983
	Ahy1g1539	167	PRINTS	MADS domain signature	16	31	IPR002100	GO:0003677\|GO:0046983
	Ahy1g1539	167	PRINTS	MADS domain signature	31	52	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy1g1539	Ahy-Chr1	63702233	63722935	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy1g1539	1	165	MADS-box Gene Family	AT4G22950	63.030	1.60e-69	208

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Ahy1g1539		K-box	6.70E-23	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy1g1539	-		-	ahf:112805426	312.383