Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1535 ATGGCTTCAATTCTTCAATATTGTAGCTTTAGTAGCTTTTTGTTGGTTACATTAACATGCATGTTCACAACCATTGGAAATGGAGCATTAGCAACGGGCATATTTAGACCTAGTGATTGGGCTCTTGCACATGCCACATTTTATGGTGATGAGTCTGCTTCTGCCACCATGGGAGGAGCTTGTGGGTATGGAAACTTGTTTTCGAACGGTTATGGAACAGACACAGCAGCATTGAGCTCAACCTTGTTCAACAATGGATATGCATGTGGGACTTGTTATCAGATAAAGTGCTACCAATCGAGTGCATGTAATGCCAATGTGCCCTACACCACTGTAACCGCCACAAATCTTTGTCCTCCTAATTGGGCCGAGCCCTCTGATAATGGCGGTTGGTGTAACCCACCAAGGGCCCATTTTGACATGTCCAAGCCCGCTTTCATGAAAATTGCACAGTGGACTGCTGGCATTGTGCCTGTTCTCTACCGCAGGTACACTCCGCCTCCTCTGTATTATTCGCACTCTCATATTCACAACGAACACGGGAAGATCGGACCTTGA 558 0.4606 MASILQYCSFSSFLLVTLTCMFTTIGNGALATGIFRPSDWALAHATFYGDESASATMGGACGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQIKCYQSSACNANVPYTTVTATNLCPPNWAEPSDNGGWCNPPRAHFDMSKPAFMKIAQWTAGIVPVLYRRYTPPPLYYSHSHIHNEHGKIGP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1535 185 PANTHER EXPANSIN-A15 2 164 IPR002963 GO:0009664
Ahy1g1535 185 SMART dpbb_1 75 161 IPR007112 -
Ahy1g1535 185 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 163 IPR007112 -
Ahy1g1535 185 Gene3D - 28 165 IPR036908 -
Ahy1g1535 185 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Ahy1g1535 185 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Ahy1g1535 185 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Ahy1g1535 185 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Ahy1g1535 185 PANTHER EXPANSIN 2 164 - -
Ahy1g1535 185 SUPERFAMILY Barwin-like endoglucanases 39 164 IPR036908 -
Ahy1g1535 185 Pfam Lytic transglycolase 75 161 IPR009009 -
Ahy1g1535 185 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Ahy1g1535 185 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Ahy1g1535 185 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Ahy1g1535 185 PRINTS Expansin signature 70 84 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1535 Ahy-Chr1 62528918 62577242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1535 1 163 Expansin Gene Family AT1G12560 57.669 1.19e-63 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1535 - - ahf:112732297 390.963