LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy1g1501	ATGGCCACTTTCACGTTTTCATTGTGCCCTCACACCCTCTGTTACCGCCCTTACACCACACGCTCTTCTTCCCTTTCTTGCTCTTTCCCCTCTTCTGCTCTCCCAGATAATGTTGGATCTGAAGTACCGAGAAAACGAATAAGAAGAATAGAAGGTCCAAGAAAGAGCATGGAAGACTCTGTTAAACGTAAGATGGAGCAATTTTATGAGGGATCCGATGGACCACCCATCCGTGTTCTTCCTATTGGTGGATTAGGTGAAATTGGAATGAATTGCATGCTTGTTGGTAACTATGACCGCTACATTCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTCCAAAAAATCATACCCGATACAACATTCATAAAAAAATGGAGCCACAAAATTGAGGCAGTTGTTATAACACATGGGCATGAAGATCATATCGGTGCGTTACCTTGGGTCATCCCAGCATTGGATTCTCATACGCCAATTTTTGCATCATCCTTCACAATGGAGCTTATTAAGAAACGCTTGAAGGAACATGGTATTTTTGTTCCATCCAGACTCAAAGTATTTAGAACAAGGAAGAAGTTTATGGCAGGGCCTTTTGAGATAGATCCAATCACGGTGACCCATTCTATTCCTGATTGCTGTGGTTTAGTACTTCGTTGTTCTGATGGGACTATTCTTCACACCGGGGACTGGAAGATTGATGAAACACCATTAGACGGTAAAGTTTTCGATCGTGAAGCTCTAGAGGAGCTCTCTAAAGAAGGAGTAACATTGATGATGAGCGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTCGTGGCAGATGCATTGTTGAGGCATATTTCAGCTGCTAAAGGAAGGGTTATTACGACTCAGTTTGCATCAAATATACATCGTCTGGGAAGCATCAAAGCTGCTGCTGATTTAACTGGTAGAAAGCTGGTATTTGTTGGCATGTCTTTAAGGACATACTTAGATGCAGCTTGGAAAGATGGAAAGGCTCGAATTGATCCATCCACTTTGATTAAAGCGGAGGATATTGATGCTTATGCTCCAAAGGATTTGCTAATTGTTACAACAGGCTCCCAAGCAGAACCTCGTGCGGCCTTGAATCTTGCGTCTTATGGAAGTAGTCATTCTTTCAAACTAACAAAGGAAGATGTTGTTTTGTATTCAGCTAAGGTTATCCCTGGCAATGAGTCCCGTGTTACAGACATGCTAAACCGCATATCAGAAATTGGATCAACAATAGTTATGGGGAAGAATGAATATCTGCACACGTCTGGTCATGGGTATCGCGGAGAATTGGAAGAAGTACTTAGAATTGTGAAACCACAGCATTTTCTTCCCATACATGGGGAACTCTTGTTCTTGAAAGAACATGAATTGCTTGGAAAGTCCACTGGCATTCGACACACCACTGTTGTTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGCTTCATTTCACTTGGAACAGAAAATTTGCAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGTACATCGAATGATCTCCTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATTGTGGTTAGCATGGAAATATTCCGCCCTCAAAATCTAGATGATCAAGTTGGAAACACATTGAAAGGCAAGATAAGAATTACTACAAGATGCCTGTGGCTTGACCAAGGGAAGCTGATGGATGCACTTCATAAAGCTGCGAATGCTGCCCTTTCAAGCTGCCCTGTAAACTGTCCACTGGCTCACATGGAAAGAATTGTGTCTGAGGTGCTGAGGAAAATGGTGAGGAAGTATAGTGGAAAGCGGCCTGAAGTTATTGCCATTGCTGTAGAAAATCCTGCAGCTGTTATTGAAGATGAGGTAAAGACAAAGTTGTCTGGCAAAGCCCATGTGGATGGGATATCAACATGGAGAAGAGTGTTAGATGGGCATGGGAAGGAAAATAACTCCACTAAAATGCAAATTAGAGGTGTTGAAGGATTAGCATCTGAAGAATACACTACCACCTCAAGTGGAGATGATGATGATATTTCTGAAACAGAGGATCAAGATGAATTTTGGAAGTCATTCGTCGATTCATCGTCAGCTGAGAAGTCAATCAAAGCTAACAATGGTTATGTTCCTCAAAAGGAGAATAAGCCCCAACTGAAGAAAGATAGTTCTGAAGAGTCTGAAGAAGAAATGTCCGAAACATCAAATTTAGAATCCAAATATTCAAAATCTGCAAAGAGAAATAAATGGAAACCTGAGGAAATTAAGAAGCTGATTGATATGCGGGGTGAACTACATGATCGATTCCAAGTAGTAAAGGGGAGGATGGCCCTTTGGGAAGAAGTATCTCAGAACTTGTCGGCAAATGGGATCAGCAGAAGTCCTGGGCAGTGCAAATCTCTATGGACATCTTTGTTACAGAAATATGAGGAGGTCAAGAATGAGAAGAATACCAAGAAAAAGTGGTCATATCTTGAGGACATGGAGAGGATTCTATCTGAAAATGAGGAACTGGCAACAAAATGA	2589	0.4144	MATFTFSLCPHTLCYRPYTTRSSSLSCSFPSSALPDNVGSEVPRKRIRRIEGPRKSMEDSVKRKMEQFYEGSDGPPIRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIKKRLKEHGIFVPSRLKVFRTRKKFMAGPFEIDPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISAAKGRVITTQFASNIHRLGSIKAAADLTGRKLVFVGMSLRTYLDAAWKDGKARIDPSTLIKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDVVLYSAKVIPGNESRVTDMLNRISEIGSTIVMGKNEYLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVVKNGEMLGVSHLRNRRVLSNGFISLGTENLQLKYSDGDKAFGTSNDLLIDERMRIALDGIIVVSMEIFRPQNLDDQVGNTLKGKIRITTRCLWLDQGKLMDALHKAANAALSSCPVNCPLAHMERIVSEVLRKMVRKYSGKRPEVIAIAVENPAAVIEDEVKTKLSGKAHVDGISTWRRVLDGHGKENNSTKMQIRGVEGLASEEYTTTSSGDDDDISETEDQDEFWKSFVDSSSAEKSIKANNGYVPQKENKPQLKKDSSEESEEEMSETSNLESKYSKSAKRNKWKPEEIKKLIDMRGELHDRFQVVKGRMALWEEVSQNLSANGISRSPGQCKSLWTSLLQKYEEVKNEKNTKKKWSYLEDMERILSENEELATK*	863

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy1g1501	862	MobiDBLite	consensus disorder prediction	736	767	-	-
	Ahy1g1501	862	Gene3D	-	81	493	IPR036866	-
	Ahy1g1501	862	SMART	Lactamase_B_5a	89	286	IPR001279	-
	Ahy1g1501	862	CDD	GT1	769	834	-	-
	Ahy1g1501	862	Pfam	Zn-dependent metallo-hydrolase RNA specificity domain	430	475	IPR011108	-
	Ahy1g1501	862	MobiDBLite	consensus disorder prediction	666	708	-	-
	Ahy1g1501	862	ProSiteProfiles	Myb-like domain profile.	763	827	IPR001005	-
	Ahy1g1501	862	Pfam	Beta-lactamase superfamily domain	100	236	IPR001279	-
	Ahy1g1501	862	PANTHER	RNA-METABOLISING METALLO-BETA-LACTAMASE	5	862	-	-
	Ahy1g1501	862	MobiDBLite	consensus disorder prediction	723	767	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy1g1501	Ahy-Chr1	58652651	58661271	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy1g1501	753	854	Trihelix Transcription Factor Family	AT2G38250	29.808	1.07e-08	55.8

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Ahy1g1501		Lactamase_B_2	4.00E-10	CL0381

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy1g1501	-		-	gmx:100814619	1422.91

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