Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1475 ATGGAACACACTGAATCCGATTCTGCTTCTTCCTCACTTCCCAATGGCGGTGGTGACTGCATCACCGCCACCCAACAAGACCCTCAACTTGCTCCTTCTTCCAATCACGGCACCGACGATCCTCAGCCGTCAGATCTCTATCAAACGGCTCAGGATGGTTCACTCTCGGCTGAGCTTCAGAGTAAGCTGGATTTGAAGGGTTTGGAAGGTGTGGGCGAAGAGGGTGGCGAGATTGGGGATAAAGTTTCAAACTTTGGCCAAGTTGGTGGTGGTGTTGATGATGGGGGTGTTACTAATGGTGACGATGAAGTTGTAAATGGTGGTGATGAGGGTTTTAAAGGTGGTGGTGCTGATGGGGATAACTGGGGGTGGGAGACCAATAGTTGGGAAGAGGAGAATGTCAATGTGGGTCTTGTGGATGGTGATTATGACGGGTTAGTTAATGAATATGTTGATGCTGATGGGGGTGATGATGTTGATGGGGTTGAGAATAGGGAAGAGAAAAGTGGTGGTGGTAGGGCACAACACCAGTACCCTTGGAGGCCTGATGCTCAGGATTGTGCATTTTATATGAAGACTAGGAATTGCAAATTTGGAATCAATTGCAAGTTCAATCACCCAATTAATAGGAGGAAAAACCAGGCTGTTAAAGAGCGGCCAGCAGAAAGAGAGGAAGAGCAAGCAGAGAGACCAGGACAGACAGAATGCAAGTATTATTTAAGGTCCGGGGGTTGTAAGTTTGGAAAAGATTGTAAATATAACCATACAAAAGGAAAAGATTTAACAACCGAGGAGGTGGCAGAACTCAATTTTCTTGGTCTGCCTATTCGTCTGGGAAAGAGAGAATGTCCTTATTACATGCGCACCGGCTCGTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGACCCTACAACTGTTGGAGGTTCTGAATCATCTCCAGGGAATGGAGGATCTGATCCTTCTTCACGGTATAGTAATGGACGATCTAATACTTCTTCAGGGTATAGTAATGGAGGATCTATTTCATTACGTGGTGTATCGCAGCAGTCTGTCTCAACATGGTCTTCTCCAAGAACAGTAAATGAAACATCTCCTTTTGTGCCAATGATGCTTTCGCCCCCAAGTCCTGATTGGAATGCATATCAGGCACCTACCTACCTATCTGAGAGGAGTATGCATCCACCTCCACCATATGTCATGAACAATCCAGTGATCGAAACAAATGTTTATATACACCCACAAAAAAGAATTCAACTTGATGACTTTCCTGAAAGACCTGGTGAACCTGAATGCAGCTACTTCCTGAAAACTGGGGATTGCAAGTTCAAATCCAATTGTAAATTTCACCATCCAAAGAATCGGATAGCAACATTACCTCCATGCAACCTCAATGACAAAGGCCTGCCTCTTAGACCTGACAAGAATGCCTGCATGCATTACACACGATACGGACTCTGTAAGTTTGGACCGGCTTGTAAGTATGACCATCCGATAAACCCAGTGCCCCCAACTGGTGTTGAAGTTGATGGGATGGGTGGAAATGGAGGTGCTGTTCAGTAA 1566 0.454 MEHTESDSASSSLPNGGGDCITATQQDPQLAPSSNHGTDDPQPSDLYQTAQDGSLSAELQSKLDLKGLEGVGEEGGEIGDKVSNFGQVGGGVDDGGVTNGDDEVVNGGDEGFKGGGADGDNWGWETNSWEEENVNVGLVDGDYDGLVNEYVDADGGDDVDGVENREEKSGGGRAQHQYPWRPDAQDCAFYMKTRNCKFGINCKFNHPINRRKNQAVKERPAEREEEQAERPGQTECKYYLRSGGCKFGKDCKYNHTKGKDLTTEEVAELNFLGLPIRLGKRECPYYMRTGSCKFGANCKFNHPDPTTVGGSESSPGNGGSDPSSRYSNGRSNTSSGYSNGGSISLRGVSQQSVSTWSSPRTVNETSPFVPMMLSPPSPDWNAYQAPTYLSERSMHPPPPYVMNNPVIETNVYIHPQKRIQLDDFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIATLPPCNLNDKGLPLRPDKNACMHYTRYGLCKFGPACKYDHPINPVPPTGVEVDGMGGNGGAVQ* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1475 521 PANTHER PROTEIN PHOSPHATASE RELATED 25 504 - -
Ahy1g1475 521 SUPERFAMILY CCCH zinc finger 475 502 IPR036855 GO:0046872
Ahy1g1475 521 MobiDBLite consensus disorder prediction 153 177 - -
Ahy1g1475 521 ProSiteProfiles Zinc finger C3H1-type profile. 277 305 IPR000571 GO:0046872
Ahy1g1475 521 SUPERFAMILY CCCH zinc finger 278 304 IPR036855 GO:0046872
Ahy1g1475 521 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872
Ahy1g1475 521 SMART c3hfinal6 277 304 IPR000571 GO:0046872
Ahy1g1475 521 SMART c3hfinal6 427 454 IPR000571 GO:0046872
Ahy1g1475 521 SMART c3hfinal6 230 257 IPR000571 GO:0046872
Ahy1g1475 521 SMART c3hfinal6 474 500 IPR000571 GO:0046872
Ahy1g1475 521 SMART c3hfinal6 181 208 IPR000571 GO:0046872
Ahy1g1475 521 SUPERFAMILY CCCH zinc finger 180 210 IPR036855 GO:0046872
Ahy1g1475 521 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 25 504 - -
Ahy1g1475 521 SUPERFAMILY CCCH zinc finger 432 457 IPR036855 GO:0046872
Ahy1g1475 521 Gene3D - 158 219 - -
Ahy1g1475 521 SUPERFAMILY CCCH zinc finger 233 257 IPR036855 GO:0046872
Ahy1g1475 521 Gene3D - 418 502 - -
Ahy1g1475 521 Gene3D - 220 308 - -
Ahy1g1475 521 MobiDBLite consensus disorder prediction 7 58 - -
Ahy1g1475 521 MobiDBLite consensus disorder prediction 306 361 - -
Ahy1g1475 521 ProSiteProfiles Zinc finger C3H1-type profile. 181 209 IPR000571 GO:0046872
Ahy1g1475 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 207 IPR000571 GO:0046872
Ahy1g1475 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 476 499 IPR000571 GO:0046872
Ahy1g1475 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 303 IPR000571 GO:0046872
Ahy1g1475 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 429 454 IPR000571 GO:0046872
Ahy1g1475 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 232 255 IPR000571 GO:0046872
Ahy1g1475 521 ProSiteProfiles Zinc finger C3H1-type profile. 473 501 IPR000571 GO:0046872
Ahy1g1475 521 ProSiteProfiles Zinc finger C3H1-type profile. 427 455 IPR000571 GO:0046872
Ahy1g1475 521 MobiDBLite consensus disorder prediction 213 232 - -
Ahy1g1475 521 MobiDBLite consensus disorder prediction 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1475 Ahy-Chr1 54630664 54634777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1475 142 504 C3H Transcription Factor Family AT1G04990 33.784 1.82e-61 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy1g1475 zf-CCCH 1.10E-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1475 - - adu:107491206 903.664