Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1471 ATGGATGGTAGAAGGCATTCAGTTGATATTCCAATTTCCAAAACTCTTGTGGCACTGAGGAGGGTGAGGTCACTGAGGGATCCATCAACTAACTGCATTAACAAGCTCTCTCCTTTGATTGACAATGTTCAATGGGAAAACGGTTCCAACAATGGCATTTCGCTGCACTTCCTCGAAGCTTCTCATGCATGCGGTTCTAGTGATAACAATGATGGTTTTAGATCAAAGACTTTAGAATTCAAGGGACATAGAGAGCAGGATACTGCTGATCTTGAGCTGAATTGTGGCCTTTTGAACTCTAAGAGGAACTATCATGGGATATCCTGCCATGAAACAAAGCGAGACGACGAGCTAGTTTATTCTAATGCTTATCAGCAAGGCATTGTTGGGAATAAATCACCGAGTGAAAGCTGTAGTAGCAACTATGGAGGTAGAGGGTTGGATCTGGCTGGCAAGGTGCCATCTGTTAATCATTTGAGGGACGGGGAATTGTGCTATTTATCTTCGCAGTTAGGGAGGGTAGATAACTTGAAGCAAACCCGAAAGTCGCAGCGCAGGACTACAAAAGTTAAACCATCTGAAGTAACAGGTGATACTGTGAGCCATGTAGGTAGTCCACACCTTTCTTTTGGTGATGCTCTCTCAGCTCATAGTGCTTCAGTACGAATAACTCAAGATGCTTTGGATAATCTACATGGATGTGGAATAAGCTGTTGTTGGTCAAAATCACCAAGATTTAGAGAATCAAATCATCATTCTGAAGTAGAAGATCTTCCTTTGTTATTGCAGCAAGCTAATGAGACTGATCTTTATGGATGCAGAAGCACAAGAAACGTAGGTGGCAGAGGTAGTCCAAATTTGGAAACTCCAAGAAGTTTATCAATGAAATTTAGGCCAAAATCTTTTGGTGATTTGGTGGGGCAAAATGTGGTTGGAAGGTCACTTATGGGGGCCATTTCCAGTGGAAGGATAACATCATTTTACCTTTTCCATGGTCCCCGTGGTACTGGAAAGACATCTGCGTCTAGGATATTTTCTGCGGCATTGAATTGCCTATCCCTTGAGGTGCAAAGGCCATGTGGTATGTGTAAAGAGTGTATTTCGCTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTTTGAGAATTAACCATGTAGACAAGGTTAAGTCCCTAATTAAGAGTGCTTGTATTCCTCCGGTTTCGTCACGCTTTAAGGTGTTCATTATCGATGAGTGCCAGTTCTTGAACGGGGAAACATGGGCTACTCTTTTGAATAGCCTAGATAATGTTTCTCAATATGTGGTTTTTGTGATGATCACCCCTGATTTGGATAACCTTCCTCGAAGTGTGGTTTCCCGGGCTCAGAGGTATCACTTTCCGAAGATTAAAGATGTTGATATCGCGAGCAGATTAAAAAAAATCTGTGTTGAAGAAGGTCTTGATTTTGAACAAGTTGCTTTGGATTTTATTGCTGCTAAATCTTGTGGTTCTCTTAGAGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAAATCACACTTACCTTAGCCCATGAGCTCACTGGTGTCGTTTCAGATGATGAATTGCTTGACTTGTTGGACCTGGCTTTGTCATCTGACACTTCAAATACAGTTATAAGAGCCCGGGAGCTGATGAGATCGCGGATAGATCCATTACAACTTGTATCACAGCTTGCAAATCTTATTATGGATATTCTTGCAGGGAAGTCTGAAGTCGGTGATTCCGAAATCAGAAGAAGATTCTTGATTAGACAAACCTCTGAAGCAGACATGCAGAAATTGAGTCATGCGTTAAAAGTACTTTCAGAAACAGAGAAGCAATTGAGAATTTCAAAGAATCAAAGAACATGGTTCACAGCAGCGCTTCTACAATTAAGTGCCGAAGAATATCCACCTGCTGATGCAACTGATGACAAGTTGTATTTGAAAGGTGCTACCAATAGAGATGGTGATTTCTGTAGTACTTCATCAACAGGGGAGAGCTTGAAGAATATTGCTACAGGTCAATGTGATGAAAAGTCATATAGATTAGGATTGCAAGAGGATCAGAAAAGAACATTGGATTCCATATGGTATAAAGCTACAGAGATATGCCAATCGAGCCGGCTCAAGGCTTTTCTCAGGAAGCAGGGAAAGTTATCTTCGCTTTGTGTCAATCAAGGCCTTGCAGCTGCTGAGTTGGAATTCCACCGTCGTGACAGTGTAGCTAGAGCCGAGAAGTCGTGGAAACTGATCGCAAGTTACCTTCAGATCATATTGGGTTGCAACATTGAGCTCAGGATCAATTACGTACCTTGTGCCACAGCTTCTAGGTATGCCAGACTAAAGAGGTCATCTTTCAATTTCTTTAATTGTTCCCGAAGAATTCTACGGAAATCGATGCCTTCTGACGACCAAGGAAGCGAATCAGACTATGCTGATCAAACTTCTGAGAAGCCTATGATGAAAGATCAGACTCTAACTTGTTCCTCTGACTTTGGTTCTCGGGTGCCACTACCTGATGTTGTAGCAGCTTTGAGAAGTTGCGAAGGTAATCTGCTAAGCTCGGGGAAGACATTCTTGAATATGTCTACTCAAGAGACTCCAAGGAATTCATGTTCTAGAGCTGATTCTCTTAAGGAAGAGGAATTCAATCAGGCCCATTTACCTTCGTCAAACATCGATTTAGACTATCAATCTAAGTGTTTTCCTCGAACCTTCTGGCTTCATAAGAAATTCTATTCATCGCATGCATCGGAACAGAAGGATTTTGTTTTCTCAAGCCACTATGTTTATCCCCCACAACTCTAA 2829 0.4171 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNCINKLSPLIDNVQWENGSNNGISLHFLEASHACGSSDNNDGFRSKTLEFKGHREQDTADLELNCGLLNSKRNYHGISCHETKRDDELVYSNAYQQGIVGNKSPSESCSSNYGGRGLDLAGKVPSVNHLRDGELCYLSSQLGRVDNLKQTRKSQRRTTKVKPSEVTGDTVSHVGSPHLSFGDALSAHSASVRITQDALDNLHGCGISCCWSKSPRFRESNHHSEVEDLPLLLQQANETDLYGCRSTRNVGGRGSPNLETPRSLSMKFRPKSFGDLVGQNVVGRSLMGAISSGRITSFYLFHGPRGTGKTSASRIFSAALNCLSLEVQRPCGMCKECISLFSGRSKDVKEVDSLRINHVDKVKSLIKSACIPPVSSRFKVFIIDECQFLNGETWATLLNSLDNVSQYVVFVMITPDLDNLPRSVVSRAQRYHFPKIKDVDIASRLKKICVEEGLDFEQVALDFIAAKSCGSLRDAEMMLDQLSLLGKKITLTLAHELTGVVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKSEVGDSEIRRRFLIRQTSEADMQKLSHALKVLSETEKQLRISKNQRTWFTAALLQLSAEEYPPADATDDKLYLKGATNRDGDFCSTSSTGESLKNIATGQCDEKSYRLGLQEDQKRTLDSIWYKATEICQSSRLKAFLRKQGKLSSLCVNQGLAAAELEFHRRDSVARAEKSWKLIASYLQIILGCNIELRINYVPCATASRYARLKRSSFNFFNCSRRILRKSMPSDDQGSESDYADQTSEKPMMKDQTLTCSSDFGSRVPLPDVVAALRSCEGNLLSSGKTFLNMSTQETPRNSCSRADSLKEEEFNQAHLPSSNIDLDYQSKCFPRTFWLHKKFYSSHASEQKDFVFSSHYVYPPQL* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1471 942 CDD HLD_clamp_pol_III_gamma_tau 465 528 IPR045085 -
Ahy1g1471 942 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 109 906 - -
Ahy1g1471 942 SUPERFAMILY post-AAA+ oligomerization domain-like 535 637 IPR008921 GO:0003677|GO:0006260
Ahy1g1471 942 MobiDBLite consensus disorder prediction 806 827 - -
Ahy1g1471 942 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 109 906 - -
Ahy1g1471 942 MobiDBLite consensus disorder prediction 180 202 - -
Ahy1g1471 942 MobiDBLite consensus disorder prediction 812 827 - -
Ahy1g1471 942 CDD AAA 328 456 - -
Ahy1g1471 942 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 292 638 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Ahy1g1471 942 Gene3D - 286 463 IPR027417 -
Ahy1g1471 942 Pfam DNA polymerase III, delta subunit 308 465 - -
Ahy1g1471 942 Gene3D - 467 528 - -
Ahy1g1471 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 514 IPR027417 -
Ahy1g1471 942 Gene3D - 529 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1471 Ahy-Chr1 54342990 54348803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1471 284 621 Core DNA Replication Machinery Family AT1G21690 26.176 3.33e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1471 - - pvu:PHAVU_003G207500g 1219.91