Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy1g1459 | ATGGCAACCATGCCTCTCTTCAAGTCCTTTACAATGGCATCACAATCATGGCTACTCTCTCCCCCGTCACTCTTTTACACCAAACCCAAACACTGCCCTTTTCACTCACTTCGTCATTCTTCTAGACTACTCAGATTTCAAGTTGCATCCTTCAATTCTTCTTCGTTCCTTTCACTTTCACGCTCTCTATGCCTCACCAACAGGACCATTCATCATTCTCCTATGCTCACCTTTGTCGCACAAGCGTCAGATTGGGCTCAGCAACAAGAAGTTGATGGTGAAGAAGAAGAAGCAACGTGGGAGAACGAAGGCGAACCCAAATGGGTAAACCAAGATGATGAAATTGAGGCTGTGATTGATGGTAGTGAGGGAGAAGGGGAAGGTGGGTTTGATGAAACTTCTGAGGATGCAAAACTCTTTGTTGGTAACTTGCCTTTTGATGTTGATAGCCAGAGACTTGCCATGCTCTTCGAGCAGGCCGGAACGGTGGAGATAGCCGAGGTAATTTACAATAGGGCAACCGATCGGAGTCGCGGGTTTGGATTTGTAACAATGAGTACAGTTGAGGAAGCTGACAGAGCTGTGGAGAAGTTCAGTGGCTATGAGTTAGATGGAAGAACGTTGACTGTTAATAAGGCTGCTCCAAGAGGATCGCAGCCGGAGCGGTCACCGCGCACCTTTGATTCCTCGTTAAGAGTATATGTTGGTAACTTGCCTTGGGATGTTGATAATATTCGACTAGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGCAAGCTCGGATAGTGTATGACAGAGAGACTGGTAGATCACGTGGTTTTGGCTTTGTCACAATGTCCAGTGAGACTGATATGAATGATGCCATTGCTGCTCTTGATGGCCAGAGCTTGGATGGGCGGTCACTCAGAGTGAGTGTTGCTGAGGAGAGGCCCAGACGCAGCTTCTGA | 948 | 0.4715 | MATMPLFKSFTMASQSWLLSPPSLFYTKPKHCPFHSLRHSSRLLRFQVASFNSSSFLSLSRSLCLTNRTIHHSPMLTFVAQASDWAQQQEVDGEEEEATWENEGEPKWVNQDDEIEAVIDGSEGEGEGGFDETSEDAKLFVGNLPFDVDSQRLAMLFEQAGTVEIAEVIYNRATDRSRGFGFVTMSTVEEADRAVEKFSGYELDGRTLTVNKAAPRGSQPERSPRTFDSSLRVYVGNLPWDVDNIRLEQIFSEHGKVEQARIVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRSLRVSVAEERPRRSF* | 316 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy1g1459 | 315 | CDD | RRM_HP0827_like | 232 | 308 | - | - | |
Ahy1g1459 | 315 | SMART | rrm1_1 | 232 | 305 | IPR000504 | GO:0003723 | |
Ahy1g1459 | 315 | SMART | rrm1_1 | 138 | 211 | IPR000504 | GO:0003723 | |
Ahy1g1459 | 315 | SUPERFAMILY | RNA-binding domain, RBD | 134 | 225 | IPR035979 | GO:0003676 | |
Ahy1g1459 | 315 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 137 | 215 | IPR000504 | GO:0003723 | |
Ahy1g1459 | 315 | PANTHER | RIBONUCLEOPROTEIN | 5 | 314 | - | - | |
Ahy1g1459 | 315 | Gene3D | - | 79 | 219 | IPR012677 | - | |
Ahy1g1459 | 315 | Gene3D | - | 220 | 314 | IPR012677 | - | |
Ahy1g1459 | 315 | SUPERFAMILY | RNA-binding domain, RBD | 225 | 313 | IPR035979 | GO:0003676 | |
Ahy1g1459 | 315 | PANTHER | OS02G0815200 PROTEIN | 5 | 314 | - | - | |
Ahy1g1459 | 315 | CDD | RRM_HP0827_like | 138 | 215 | - | - | |
Ahy1g1459 | 315 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 139 | 208 | IPR000504 | GO:0003723 | |
Ahy1g1459 | 315 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 233 | 303 | IPR000504 | GO:0003723 | |
Ahy1g1459 | 315 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 231 | 309 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy1g1459 | Ahy-Chr1 | 52916212 | 52919851 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy1g1459 | 107 | 313 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 31.019 | 1.19e-22 | 96.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy1g1459 | - | - | gmx:100804984 | 365.54 |