Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1398 ATGTCTAAACTGGGTAAATTATACAATAACGATGGAGGAAAAATACACGCCTCAGTTAAGAAGGCTTTTTTGTCTCGATTCGTGAATTTGCTGGAGGAAGGAATATCTTACCAAATAAGATATTTTGGTGTTGGACTCAATAAGGGTTACTTCAAGACTACACATCATGAATACGTGGTTAATTTAAACCAACGTACTGATGTGCACAGACTTCCAGAATCGTCGAGTATCCCACGATATGGATTTAAGTTTGTGAGTTTTGACACTCTCAATGCTCCTGGGTATGATTGCACCTATTTAGTTGATGTTGTTGGATATCTTGCTGGAATTGGGAATGAGAAGACTCTTGAAAAGGATGGCAAATCTACCAAATATATTGTTATCGAATTAGAGATTGATGATGGAAAAATAATGGAGTGTGCACTTTTTGGCAACTATGCACATGAATTAAATGCTTTTCTGGGATCTGGCAATAAGGATGGAGCTGTTGTCGTCTTACAGTTTGTTAGAGTGAAGTTATTTAACGAAAAGATTGTTTTACAAAATTCCATGTATGGCACAAAGATGTTCTTCAATCTTGAAGATACAACTGTCATCCAATTTAAAAATAGCTTTGTAAGATTTGAAGAATCTAGAGGTAACATCGGCGGAATTCCAAATGAGGCTGCATTCTTAAAAATTTATCAAGGCAAAACCATCGAGCAGTTAAAAGAATTCGAAACGACTGGTGGTACGGCCAATGTGAATGCAACAGGTCCACATATGCTTTTACAAAAACTTTCAAATGTTCAAGTTGTGGCCGTCTCCTTTTATCCATAA 819 0.3651 MSKLGKLYNNDGGKIHASVKKAFLSRFVNLLEEGISYQIRYFGVGLNKGYFKTTHHEYVVNLNQRTDVHRLPESSSIPRYGFKFVSFDTLNAPGYDCTYLVDVVGYLAGIGNEKTLEKDGKSTKYIVIELEIDDGKIMECALFGNYAHELNAFLGSGNKDGAVVVLQFVRVKLFNEKIVLQNSMYGTKMFFNLEDTTVIQFKNSFVRFEESRGNIGGIPNEAAFLKIYQGKTIEQLKEFETTGGTANVNATGPHMLLQKLSNVQVVAVSFYP* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1398 272 PANTHER REPLICATION FACTOR A 1, RFA1 56 243 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy1g1398 272 SUPERFAMILY Nucleic acid-binding proteins 82 205 IPR012340 -
Ahy1g1398 272 CDD RPA1_DBD_B_like 102 205 - -
Ahy1g1398 272 Pfam Domain of unknown function DUF223 7 88 IPR003871 -
Ahy1g1398 272 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 56 243 - -
Ahy1g1398 272 CDD RPA1_DBD_A_like 11 68 - -
Ahy1g1398 272 Gene3D - 76 211 IPR012340 -
Ahy1g1398 272 Gene3D - 6 73 IPR012340 -
Ahy1g1398 272 SUPERFAMILY Nucleic acid-binding proteins 7 76 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1398 Ahy-Chr1 47376672 47381192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1398 7 148 Core DNA Replication Machinery Family AT2G06510 26.897 1.95e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1398 - - ahf:112722049 543.502