Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1390 ATGGGTAAGCCACTTAAGGATCTAACAGCAACTAATAGAAAGGAATTTGAGGATTATTTTTTGAAGCGAGAGTTGCTCATGGGAATATATAAGAAGGTTTTTAAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGAAAGGGCTAAAAGTGGGACAGGCAAAACAGCTGCATTTTGCATTCCTACATTGGAAAAAATTGACCAGGATAATAATGTTGATAAGCTTTTGTCCCCAGAAGTCCAACCTTCTATAGTTGTTATTAATTTTTATTTTCCCAAGAATTTAGAAACTTATCTCCACAGGGTCGGTCGCTCAGGGTGGTTTGGGCATCTTGGTTTAGCAGTTAACTTGATCACTTATTGCGACCACTTTAATTTGATTGAACAAGAATTTGGAATTAAAATAAAGCAAATTCCACCATACATTGACCAGATTATTCGTGAAGTGTATTGTGGAGCTTTCCATTTGGTTCCTTTATCCGATGAAGGCCTTGTACAAGCTTTGGGTGATTCAATGACATTTCTTAATTCGCTTCCTAGAAATTCATTTTTGTTTATGTTTGATCTAACAGCAACTAAAAGAAAGGAATTTGAGGATTATTTTTTGATGCGAGAGTTGCTCATGGGAATATATGAGAAGGTTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGAAATGGCTAAAAGTGGGACAGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGACCAGGATAATAATGTTATTCAAGATATACAGGTCGGTCGCTCAGGGTGGTTTGGGCATTTTGGTTTAGCAGTTAACTTGATCACCTATTGGGACCACTTTAATTTGATTGAACAAGAATTAGGAATTGAAATAAAGCAAATTCCACCATATATTGACCAGATTATTCGTGAAGTGTATTGTGGAGCTTTCCATTTGGTTCCTTTATCCGATGAAGGCCTTGTACAAGCTTTGGGTGATTCAATGACATTTCTTAATTCGCTTCCTAGAAATTCATTTTTGTTTATGTTTGTAAATTTCATGTACACTGTCGTTGCATGTATAGAGATGACATGGCTAATTTGGTTTGAATTCTACTAA 1161 0.3635 MGKPLKDLTATNRKEFEDYFLKRELLMGIYKKVFKRPSPIQEESIPIALTGSDILERAKSGTGKTAAFCIPTLEKIDQDNNVDKLLSPEVQPSIVVINFYFPKNLETYLHRVGRSGWFGHLGLAVNLITYCDHFNLIEQEFGIKIKQIPPYIDQIIREVYCGAFHLVPLSDEGLVQALGDSMTFLNSLPRNSFLFMFDLTATKRKEFEDYFLMRELLMGIYEKVFERPSPIQEESIPIALTGSDILEMAKSGTGKTAAFCIPALEKIDQDNNVIQDIQVGRSGWFGHFGLAVNLITYWDHFNLIEQELGIEIKQIPPYIDQIIREVYCGAFHLVPLSDEGLVQALGDSMTFLNSLPRNSFLFMFVNFMYTVVACIEMTWLIWFEFY* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1390 386 Gene3D - 93 160 IPR027417 -
Ahy1g1390 386 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 90 156 - -
Ahy1g1390 386 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 196 277 - -
Ahy1g1390 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 87 IPR027417 -
Ahy1g1390 386 Gene3D - 5 92 IPR027417 -
Ahy1g1390 386 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 278 323 - -
Ahy1g1390 386 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 6 84 - -
Ahy1g1390 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 156 IPR027417 -
Ahy1g1390 386 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 14 42 IPR014014 GO:0003724
Ahy1g1390 386 SUPERFAMILY RCC1/BLIP-II 143 351 IPR009091 -
Ahy1g1390 386 Pfam DEAD/DEAH box helicase 230 269 IPR011545 GO:0003676|GO:0005524
Ahy1g1390 386 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 205 233 IPR014014 GO:0003724
Ahy1g1390 386 PANTHER ATP-DEPENDENT RNA HELICASE DEAD-BOX, CONSERVED SITE-RELATED 278 323 - -
Ahy1g1390 386 PANTHER ATP-DEPENDENT RNA HELICASE DEAD-BOX, CONSERVED SITE-RELATED 90 156 - -
Ahy1g1390 386 Gene3D - 198 282 IPR027417 -
Ahy1g1390 386 PANTHER ATP-DEPENDENT RNA HELICASE DEAD-BOX, CONSERVED SITE-RELATED 196 277 - -
Ahy1g1390 386 PANTHER ATP-DEPENDENT RNA HELICASE DEAD-BOX, CONSERVED SITE-RELATED 6 84 - -
Ahy1g1390 386 Pfam DEAD/DEAH box helicase 39 79 IPR011545 GO:0003676|GO:0005524
Ahy1g1390 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 271 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1390 Ahy-Chr1 46929717 46962413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1390 16 77 Eukaryotic Initiation Factors Gene Family AT5G11200 48.387 3.07e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1390 K12614 - aip:107643629 160.229