Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1309 ATGGAGAGACAGAAATGCTGCAAGCTCTGCTCAAGAACCTTCCCTAATGGAAGAGCCCTAGGTGGCCACATGAAGGCTCACTTGGCCACTTTTCCTCTCCCCCCTAAACCCCCTCAACCACCAGCACCACCATTACCTTCTTCTGAATCCTCCTCTTCATTTTCCTCCTTCTCAGAATCGGAACCCGAAGACAAGACTGCTTTGATTTATGGGTTGAGGGAGAATCCCAAGAAGAGTTTCAGAGTCGCAGATCCCGAGTTCTCTCCCTTGGCTGCACCACTTCTACCGCCACCTGACTCTGTTGCGGTTCAAGACAGAGAGAGCGAGACAGAGTCATCAAAGAAACCAACTCGCCAACGATCCAAGCGAACTTGGAGAGCAAGGTCCATTCTTCACAACCATGAAGACGACAAAGAACAGCTTAAGAAGAAGCAGCCCAAGCTTGGATTTATGGAACATGAACATGAATATGAAGCAGAACCGGTGAGCTCAGTCTCGGAAACTTCAGTAGTGGAAGACGTCGCCATGTTCCTGGTTATGCTCTCAAGGGACACGTGGTCCAACAAAGATGCAATACTAGTAAAACAAGAAGGAGAAGTTGAAAGATCAAAGGCTGGGAGCGGCAATGGGATCAAGATGAAGAAGGTTCGTGTTCGCGGGAAGCATAGTCATCAGTGTGAGAATTGCGGTAAAACTTTTCGATCTTCGAGGGCGTTGGGAAGTCATAGGAGCATATGCTGTGACGGAGGAGGATCAGGAGCAAGTGATAGAATCTTCCAATGCCCGTTTTGTTTCAAAATCTTTGGCTCTGGCCAAGCCCTTGGCGGTCACAAGAGATCTCATCTCATCGCCATGGCGGCACCTTCCTCCTCTTCTTCCACTGCCAAGAATTTCATAGATCTCAACTTGCCTGCTCCACTAGAAGAACAACATGAAGATGACCTTGGTGTTGTTTCGGATGTTTCCTATACTTGA 975 0.4831 MERQKCCKLCSRTFPNGRALGGHMKAHLATFPLPPKPPQPPAPPLPSSESSSSFSSFSESEPEDKTALIYGLRENPKKSFRVADPEFSPLAAPLLPPPDSVAVQDRESETESSKKPTRQRSKRTWRARSILHNHEDDKEQLKKKQPKLGFMEHEHEYEAEPVSSVSETSVVEDVAMFLVMLSRDTWSNKDAILVKQEGEVERSKAGSGNGIKMKKVRVRGKHSHQCENCGKTFRSSRALGSHRSICCDGGGSGASDRIFQCPFCFKIFGSGQALGGHKRSHLIAMAAPSSSSSTAKNFIDLNLPAPLEEQHEDDLGVVSDVSYT* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1309 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 245 IPR013087 -
Ahy1g1309 324 Gene3D Classic Zinc Finger 218 294 - -
Ahy1g1309 324 MobiDBLite consensus disorder prediction 104 118 - -
Ahy1g1309 324 MobiDBLite consensus disorder prediction 31 47 - -
Ahy1g1309 324 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 320 - -
Ahy1g1309 324 MobiDBLite consensus disorder prediction 88 129 - -
Ahy1g1309 324 MobiDBLite consensus disorder prediction 48 62 - -
Ahy1g1309 324 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Ahy1g1309 324 SUPERFAMILY beta-beta-alpha zinc fingers 6 243 IPR036236 -
Ahy1g1309 324 Pfam C2H2-type zinc finger 259 282 - -
Ahy1g1309 324 Pfam C2H2-type zinc finger 6 29 - -
Ahy1g1309 324 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 320 IPR044303 GO:0006355
Ahy1g1309 324 MobiDBLite consensus disorder prediction 28 72 - -
Ahy1g1309 324 ProSitePatterns Zinc finger C2H2 type domain signature. 6 27 IPR013087 -
Ahy1g1309 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Ahy1g1309 324 SMART c2h2final6 224 244 IPR013087 -
Ahy1g1309 324 SMART c2h2final6 5 27 IPR013087 -
Ahy1g1309 324 SMART c2h2final6 259 281 IPR013087 -
Ahy1g1309 324 Pfam Zinc finger, C2H2 type 224 244 IPR013087 -
Ahy1g1309 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 281 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1309 Ahy-Chr1 38825880 38828243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1309 1 310 C2H2 Transcription Factor Family AT1G02030 35.152 2.60e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy1g1309 zf-C2H2_6 6.20E-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1309 - - adu:107486002 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1329 11 46910470 46911946 Ahy1g1309 1 38825880 38828243 hybridization
Ahy5g1626 5 42547027 42548795 Ahy1g1309 1 38825880 38828243 PCT
Ahy1g1309 1 38825880 38828243 Ahy5g1626 5 42547027 42548795 PCT